Cyclopterus lumpus (lumpfish): 117732750
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Entry
117732750 CDS
T09199
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04510
Focal adhesion
clum04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117732750 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117732750 (lamb1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
117732750
NCBI-ProteinID:
XP_034391791
Ensembl:
ENSCLMG00005020415
LinkDB
All DBs
Position
6:71044..122362
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AA seq
1797 aa
AA seq
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MWELQLSVLLVLQVFIYAQDGGASGKSAQDDVSLPGFSDVCTEGSCYPATGDLLIGRAHQ
LSSTSTCGRNRPEPFCIVSHLQEEKKCFMCDSSSPYDVLRSPTSGHRIENVVTTFAPNRL
KTWWQSENGLENVTLQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKTWQLYRYFAY
DCETSFPSVSQGPMQKVDDVICDSRYSDIEPSTEGEVIFRVLDPAFRIDDPYSPRIQNML
KITNLRVKFTRLHTLGDNLLDSRMEIKEKYYYAIFDMVVRGNCFCYGHASECAPIQEAGH
SSEGMVHGHCMCNHNTKGLNCEKCQDFYHDLPWRPAEGRDTNACKKCNCNQHSSSCHFDI
AVFVASGNISGGVCDGCQHNTAGHNCEQCQPFYYQHPERDVRDPNVCQSCDCDAQGSLSG
GTCDWTTDVRAGLIAGQCRCKDNVEGERCGRCKPAHYGMGDEPEGCKACSCSSVGTLPGG
NPCDSETGSCFCKRLVTGQDCDQCVSEHWGLSNDMDGCRPCDCDLGGAINNQCDQVSGQC
VCRDHMFDRRCDQVESGFYFIALDHYTYEAEDAKFGPGVIVVPRPHPLDRSPTWTGIGLV
NIPEGAFLEFSVDNIPHSMEYDILIRYEPQLPDQWEEVLMTVMRPGPIRADSRCVNTVPD
DDHQMISLHPGSRYVALPRPVCFESGLNYTVRLSLALYSALSDVLSPYTLIDSIVLMPHC
KNLEIFSDSVGDSSVNSGWETFQRYRCLENSQSIIKSPMTDICRNFIFSISAMLHQGAKE
CHCDPQGSLSTVCDPSGGQCQCRPNVVGRNCDRCVPGTFQFGPNGCRACACDPQGSQSLF
CDQLTGQCVCVLGAYGRQCDRCLPGHWGFPSCRPCSCNGHTEDCNPDTGSCINCRDHSTG
HTCDRCLDGYYGDPVLGSGDHCHPCMCPDGPASLRQFAGSCYDGNSQHTICACNTGYRGS
RCDECSPGYYGNPGEAGGQCQQCQCNNNIDVLDPESCDGRTGECLRCLHHSEGAGCQSCK
QGYYGNALLQDCRKCVCDQLGSDSSGCPSPGSCPCERSSGRCRCLPNVTGQHCDRCAVDT
WNLASGHGCQSCGCASAHSYGTSCNEVSGQCSCQPGFGGRTCSECRELFWGDPAVQCHAC
DCDPRGVSEPQCNKASGHCVCVDGVSGPRCDVCSRGFSGTFPDCHRCHQCFSEWDSIIGQ
LTNQTHRLVNKVNAVKASGGSGPYKKSIESMERSVADVWVLLNQNPASQPLTETQELLQQ
ASDLMGALSRMLNHTEQTLVQVEDEDSAAETKLESVTSDAQKLERTVQELQDQVEFIKNS
DIKGATDSVSKYLEKSLAAEVRANASTIDPGSAVETSSALRQLTVDKLNQTREEFLRRHT
EHAQRLDDLAGELQTLDLSEISHKTCGSPSSGQHSCWSSPCGGLGCVDSEDWTWCGGDGC
DGVKTAASSIWRKTRDSEQEIISAMEEVEKLSKMVSEAKEKADEAKLSAQDVLMKTNRTK
QKVQQSNEELRGLIRQIRDFLTQDAADLESIELVANEVLAMQMPTTPAQLQNLTDDIRQK
VGELGNVESILQQSAADIQRAENLLDQARRASEEAAGVKDSAVKVKRALEEAERAQTAAN
SAIQQAAADIQTTNQLVSTVQLETAQAELKLTNATQRLQRLEQDVTLLRDKDLNVTVSTE
RTNQDAASIRKVAEEVKKDLDSEVKKKYAKVEQLIAQKAGGVANAKKRAESLQLEAKELL
LKASDKLQLLKDLEKSHEDNQRTLEVKAEQLVDLEVAVKELLQEISHKVTIYSTCLF
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atgtgggagcttcagctttcggtgctgctcgtcctgcaggtattcatctacgctcaggat
gggggggcctcaggaaaaagcgctcaggatgatgtcagccttccagggttcagtgacgtg
tgcacagagggcagctgttacccagcaacaggagaccttctgattggcagagcccaccaa
ctgtcatccacttccacctgtggaaggaatcgacccgaaccattctgcatcgtcagccac
ctgcaggaggagaagaagtgtttcatgtgtgactcttcttcgccgtatgacgtgctgagg
agtccgaccagcggccatcgcatcgagaacgttgtcaccacgtttgctcccaacagactg
aagacctggtggcagtctgagaacggtctggagaacgtcactctacagctgaacctggag
gccgagtttcatttcacacatctcattatgaccttcaagacgtttcgacctgctgccatg
gtgatcgagcgctcagctgacttcgggaaaacgtggcagctttatcgttacttcgcctac
gactgtgagacctccttcccctctgtttcccagggaccaatgcagaaagtcgatgacgtc
atctgtgactcgcgttactccgacatcgagccgtccactgaaggagaggtaattttcaga
gttctggacccagcgttcaggatcgatgatccctacagccccagaatccagaacatgttg
aagatcaccaacctacgggtgaagttcactagactgcacacgctcggcgataacttgctg
gactctcgtatggagattaaagagaagtattattacgccatctttgacatggtggtccga
ggaaactgcttctgctatggacatgcctctgagtgtgccccgatccaagaagccggccat
agcagtgagggcatggttcacggtcattgcatgtgtaaccacaacactaaaggtctgaac
tgtgaaaagtgtcaggatttctaccacgacttgccgtggagaccagccgagggacgcgac
actaacgcctgcaagaagtgtaactgtaaccagcactcctcctcgtgtcacttcgacata
gccgtgttcgtggcttcaggaaacatcagcggaggagtatgtgatggctgtcagcacaac
acggccggacacaactgtgagcagtgtcagccgttctactaccaacatccagagagggat
gtcagagaccccaacgtctgtcaatcctgtgactgcgacgctcagggctcgctgagcgga
ggaacctgtgactggacgacggacgtgcgagccggtctgattgccggtcagtgtcgctgt
aaagacaacgtggaaggggagcgatgcgggcgctgcaagccggcgcactacgggatgggc
gacgagccggaaggctgcaaggcgtgtagctgcagttccgtgggaacacttcctggagga
aatccctgcgacagtgaaacaggaagctgtttctgtaaacgtctggtgacgggacaagac
tgtgaccagtgtgtgtctgaacactggggtctcagtaatgatatggatggctgcagacca
tgtgactgtgaccttggaggagccatcaacaaccagtgtgatcaggtgagtggacagtgt
gtctgcagagatcacatgttcgatcgacgctgcgatcaggtcgagtctggattctacttc
atcgctctggatcactacacctatgaggcagaggacgccaagtttggacctggagtgata
gtggtcccaagaccccatcctctggatcgcagtcccacatggacaggtattggcctggtc
aatataccagagggggccttcctggagttctctgtggacaacattccccactccatggaa
tacgacatcctcatccgctacgagcctcagctgcctgaccaatgggaggaggttctgatg
acggtgatgaggccaggaccaatcagagcagacagtcgctgtgtcaacaccgtgccagac
gacgaccaccagatgatctctctccatcccggctcacgatatgtggctcttcccagaccc
gtttgttttgaatcgggtctgaactacacagtccgcctcagtctggctctgtactcagcc
ctcagtgacgtcctgtctccttatacactcattgactcgatcgtgttgatgcctcactgt
aagaacctggagatattctcagattcagtaggagactccagtgtgaacagtggttgggaa
acttttcagcgttatcgttgtctggagaacagccagagcataatcaagtcgccgatgacc
gacatctgcaggaacttcatcttcagcatctcagccatgttgcaccagggagctaaagaa
tgccactgtgatcctcagggctcccttagcaccgtgtgtgatcccagtgggggtcagtgt
cagtgtcgccccaacgtggtcggcaggaactgtgaccgatgtgttccgggcacattccag
ttcggacccaacggctgcagagcatgtgcctgtgaccctcagggttcacagagtttgttc
tgcgaccagctgactggtcagtgtgtttgtgttttgggagcgtacggtcggcagtgtgat
cgctgtctgccggggcactggggcttcccctcctgccgaccttgctcctgcaacggacac
accgaagactgcaaccccgacaccggaagctgcatcaactgccgggaccacagcactggg
cacacctgtgacaggtgtctggatggttactatggggacccggtgttggggtcaggtgac
cactgccatccctgcatgtgtcccgatggccccgccagcctgcggcagttcgcaggaagt
tgttatgacggtaactcccagcataccatctgcgcctgcaacaccggatacagaggttct
cgctgtgacgagtgctcacctggttactatggaaaccccggggaggcgggggggcagtgc
cagcaatgtcagtgcaacaacaacatcgacgtgttggacccggagtcctgcgatggccga
accggcgagtgtctgcgttgccttcaccacagtgagggtgccggctgccagagctgcaag
cagggctactacggcaacgcactgctgcaggactgcaggaagtgtgtttgtgaccaactg
ggcagcgactcctctggctgtccgtcacccggcagctgtccctgcgagcgtagcagcggt
cggtgtcgctgcctacccaacgtcaccgggcagcactgcgaccgctgtgcagtagacacc
tggaacctggcgagcggacacggctgccagagctgcggctgcgcctccgcacactcgtac
gggacgtcctgcaatgaggtcagcggccagtgttcctgtcagcccggctttggaggaaga
acatgcagcgagtgtagagagctgttctggggagacccagcggtccaatgtcacgcgtgc
gactgtgatcctcgcggtgtctccgagccgcagtgtaacaaagccagcggtcactgcgtt
tgtgtggacggggtttctggtccacgctgcgatgtatgcagccgcggcttctctggaacc
ttccccgactgccaccgctgccatcagtgcttcagcgagtgggacagcatcatcggtcag
ctgaccaatcagacgcaccgtctcgtcaacaaggtcaacgccgtgaaagccagcggaggc
agcggaccatacaagaagtccatcgagagcatggagaggagtgtcgccgacgtctgggtc
ctcctgaaccagaacccggcctctcaaccactgactgagacccaggagctgctgcaacaa
gccagtgacctgatgggggccctgagccggatgttgaaccacactgaacagactctggtc
caggtggaggacgaagactcggctgcagaaactaaactggaatctgtgacgtcggatgca
cagaaactggagcggacagttcaagagttgcaggatcaggttgagttcatcaagaactct
gacatcaaaggggccacagacagcgtctcaaagtacttagagaagtctctggcagctgaa
gtccgagcgaacgcctccaccattgatcccggcagcgcggtggaaacctccagcgctcta
cggcaactcacagtggacaaactgaaccaaaccagagaggaattcctgaggagacacact
gagcatgctcagagactggacgacctggccggagagctgcagactctggacctctcggag
atcagccacaagacttgcggcagtccatcatcaggtcagcactcatgctggtcctctccc
tgtggaggtctgggatgtgtggactctgaggattggacctggtgtggaggtgatgggtgt
gacggcgtgaagacggcggccagcagtatctggaggaagacccgagactctgagcaggag
atcatcagtgccatggaggaagtggagaaactctccaagatggtgtcggaggccaaggag
aaagcggacgaggcaaagctgagtgctcaggacgtcctgatgaagactaacaggaccaaa
cagaaagtccagcagagcaacgaggagctgagaggcctcatcaggcagatccgggacttc
ctcacacaggacgctgcagacctggagagcatcgagttagtggctaacgaggttctggcc
atgcagatgccaactacgccggctcagctgcagaacctgaccgacgacatccggcagaag
gtgggagagttgggaaacgtggagagcatcctgcagcagagcgccgccgacattcagaga
gccgagaacctgttggaccaggcccgccgagccagtgaggaggcagcaggtgtgaaggac
tctgcagtgaaagtgaagcgcgctctagaggaagctgagagggctcagactgccgccaac
agtgccatccagcaggctgccgctgacatccaaaccaccaaccagctggtgtccacggtg
cagttggagacggcccaggcagagttgaagctgactaacgccacccaaaggctgcagagg
ctcgagcaggacgtgacgctgctgagagacaaagatctgaatgtcactgtgagcactgaa
cgcaccaatcaggacgcagcgagcatcagaaaggtggctgaggaagtgaagaaggatctg
gactcggaggtgaagaagaagtatgccaaagtggagcagctgattgctcagaaggcaggg
ggcgtggctaatgctaagaagagggcggagtcactgcagctagaagccaaagagctgctg
ctgaaggccagtgacaaactgcagctgctcaaagacctggagaagtctcacgaagacaac
cagcggactctggaggtgaaggcggagcagctggtggacctggaggtggccgtgaaggag
ctgcttcaggagatcagccacaaggtcaccatctactccacctgtctgttctag
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