Cyclopterus lumpus (lumpfish): 117732752
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Entry
117732752 CDS
T09199
Symbol
blm
Name
(RefSeq) Bloom syndrome protein homolog isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03440
Homologous recombination
clum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117732752 (blm)
03460 Fanconi anemia pathway
117732752 (blm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clum03032
]
117732752 (blm)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117732752 (blm)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117732752 (blm)
DNA replication proteins [BR:
clum03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
117732752 (blm)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
117732752 (blm)
Bloom's syndrome complex (BTR)
117732752 (blm)
FA (Fanconi anemia) pathway
117732752 (blm)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
BLM_N
BDHCT
Helicase_C
RecQ_Zn_bind
HRDC
RQC
ResIII
DUF1178
Motif
Other DBs
NCBI-GeneID:
117732752
NCBI-ProteinID:
XP_034391793
Ensembl:
ENSCLMG00005007349
LinkDB
All DBs
Position
6:complement(12027953..12036824)
Genome browser
AA seq
1359 aa
AA seq
DB search
MSCLPRNNLKEQLARHNNAAQSKLSLAKPKPGAFSFKKKSSSGTTKVEVPNKVNSSNFLE
NRNVNVPQINLVTKSSLTFPNKLERPQISPIHNFFSASSKGKSDSISPEGNCAGQTPSAV
SAIKVTTAATKSDNQFTSGNGGNSTSLDASLGFPMDDWDDLDDFETPVKNDSFSSKISGK
STNPVSSFSEEKVQEPSLNKEFEPEVSPLKPTRRRPPCHLNSVISDSEEDNDDVLEPFKG
KTDDKKKWLDSKIIKLDDNSEPEDDLDYIPPSPIPDEIAYTTSILETRSKSADAKSRLSP
VQSKGPITTLHGSSDNHSKEKTNEQLFSIMQSICSLVDSIPEHEVIALSCGSELLLNRAQ
RKRILATGGCNSLRMQQPDSPLISVSSFKGKSSFSCDTSSVMSSSSSVPVDSKKPPQIRR
SSVISVDYDSDHSDSIINTKSSHNRNSGTQYVTSQSISDSPSTHSRTDPSFNFSRKTSTD
LDGSELFSSKKPETVFQNKSNTPAASNTTEDIELDDFYSDYFDIDDFNASDIPDYFDEPP
NSSTVTKKVKEGGSSKSPWENKPTTPAPKPAKICSPEPTFRNPAHDRFRGFNFPHSQEMM
KIFHKRFGLHQFRFNQLEAINATILAEDTFVLMPTGGGKSLCYQLPACVSPGVTVVISPL
KSLIVDQVQKLTTLDIPAISLSGSKSDSEAGRIYMQLSRKDPIIKLLYVTPEKVSASNKL
ISALQNLYERGLLVRFVIDEAHCVSQWGHDFRPDYKKLHELRQKFPNVPMMALTATATPR
VQKDILNQLNMTRPQVFTMSFNRTNLKYAVLPKKPKKVDEDCIDWIKKHYPRDSGIIYCL
SRNDCDAMAESLQRSRILALSYHAGLRDDDRELVQTKWINQDGCQVICATIAFGMGIDKP
DVRYVIHASLPKSVEGYYQESGRAGRDGDISHCILFYSYSDVHRIKRIISMDREGDRHTK
GTHFTNLHSMVHFCENMMECRRIQLLAYFGELNFNKSFCKEHADVSCDNCAKPNQYKMRN
VTEDVKKIVRFVQENCEKVGSRFGRTAQQNRLTLNMLVDIFVGSKSAKVQTGMFGMGGAY
SRHNADRLFKKLVLDNVLEEDLYITVNNQAVSYISAGPKAQNVLSGHMQIEFYETESASS
VRKQKAAVGKNVSAREEKVQECLKELTDLCKQLGKAFGIHYFNIFSTATLKKIAEKLSSD
PEVLLQIDGVTEDKLEKYGAEVIQVLDKYSEWQLPEEQTDTAGDGWIDTAQGRSYGDNED
DTESSTYFHSQSAQGQKRKKAPFFKYSKKRKSGNSKGRGYSSNKSWSSSSSRGGSNAAGR
GSRSSTGDASASRRPGFMSVPAPQTNQRPFLKPAFSHLG
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtcttccacgaaataacttgaaggagcagctggcgaggcacaacaatgctgct
caaagcaagttgtctctggctaaacccaaaccgggggccttttctttcaaaaagaagtcc
tcgtcgggtacaaccaaggtggaagtcccaaacaaggtaaacagctctaattttttggaa
aaccggaatgtcaatgtccctcagatcaatttggtgactaaatcttctttgacatttcca
aacaagcttgagagacctcaaatatccccaatccacaacttcttctctgcaagttcaaaa
ggcaagtcggactccatcagcccagaaggcaattgtgctggccagactccttcagcagtg
tctgctattaaggtgacaacagctgcaactaaatctgacaaccagtttactagtggcaat
ggaggcaattccacaagtctggatgcatctcttggattcccgatggatgactgggatgat
ttggatgactttgaaactcctgtcaaaaatgactcatttagctcaaaaatatctgggaag
agcaccaatccagtatcatcttttagtgaagaaaaagtacaagaacctagtttgaataag
gagtttgaacccgaagtttctccactaaaaccgaccagaagacgtcctccttgccatctg
aattccgtcataagtgatagtgaagaggacaacgatgatgtgcttgagccttttaaagga
aagacggatgacaagaaaaaatggcttgactcgaagataataaagcttgatgacaactca
gagcctgaagatgatcttgattacattcccccatctcccatcccggatgagatagcttat
actacttctatattggagaccagatctaaatcagctgatgctaaaagcagactcagtcct
gtccaatcaaagggacccatcaccacactacatggatcctctgataaccactcaaaagaa
aaaacaaatgagcaactcttcagtattatgcagtccatttgttctctggttgattccatc
cctgaacatgaagttatagctctgtcctgtggaagtgagcttttgctgaatagggctcaa
aggaagaggattcttgcaactggtggttgcaattccttgaggatgcagcagccagacagc
cctttgatttctgtatccagctttaaaggaaaatcttcttttagctgtgatacgtctagt
gttatgtcatcaagcagctctgtgcctgtggactccaagaagcctcctcagatcaggaga
tcttcagtcatctctgtggactatgattctgatcactcagacagtattattaacacaaag
tcctcacataataggaacagcgggacacaatatgtgacaagtcagagcatctctgactct
ccatcaacccacagtcgaacagatccatcttttaacttctcaaggaaaacgagcacagac
ctagatggttcagagctcttctcatccaagaagccagaaactgtttttcagaacaaatct
aatactccagcagccagtaacacaacagaagacatagaactagatgacttttacagtgac
tactttgacatagatgactttaatgcctcagatatccccgattactttgacgaaccccca
aactccagcactgtgactaaaaaagtgaaagaagggggatcaagcaagtctccatgggag
aataagccaacaacgcctgcgcccaagcctgcaaagatctgctctcctgaacccaccttc
agaaacccagcccacgatcgcttcagagggttcaacttcccccactcacaggagatgatg
aagattttccacaagcgtttcggtcttcatcaattcaggttcaatcaacttgaagcaatt
aatgcaacgattctggcagaagatacgtttgttttgatgcccacaggtgggggtaaaagc
ctgtgctaccagctgcctgcctgcgtgtcaccaggagtcactgtggtcatctccccactc
aaatctctcattgtagaccaggtccagaaacttactacactggatattccagcaataagc
ctctctgggagtaaaagtgacagcgaagcagggaggatttatatgcagctctctaggaaa
gaccctatcattaaacttctctatgtcactcctgaaaaggtgagtgcaagtaacaagctg
atctccgccctgcagaacctgtacgagcgaggccttttggtgcgctttgtcatagatgag
gcccattgtgtcagtcagtggggtcacgatttccgtccagactacaagaagttgcatgaa
ctgcgtcagaagttccccaacgtgccgatgatggccctgacagccaccgccaccccccgt
gttcagaaagacatcctcaaccagctgaatatgacacggccgcaggtgttcaccatgagc
ttcaacagaacaaacctgaagtacgctgtcctgcccaagaaacccaaaaaggttgacgag
gactgcattgactggatcaagaagcattacccacgtgactctggcatcatttactgcctg
tcccgtaatgactgtgatgccatggcggagagtctccagagatcacggatattagctctg
tcgtatcacgcaggtctgagggacgatgacagagaactcgtgcagaccaagtggatcaac
caggacggctgccaggtcatctgtgccaccatagctttcggcatgggcattgacaagcct
gatgtgcgttatgtgattcacgccagtctgcctaaatcagtggagggttactaccaagag
tctgggagagctggcagagatggagatatctctcactgtattctcttctactcctactct
gacgtccaccgcatcaagaggatcatcagcatggacagagaaggtgaccgacacaccaaa
gggactcatttcaccaacctgcacagcatggtgcacttctgtgagaacatgatggagtgc
aggagaattcagctacttgcatactttggggagctgaatttcaacaaaagcttctgtaag
gaacacgcagacgtcagctgtgacaactgtgccaaacccaaccaatacaagatgagaaat
gtcactgaagatgtgaagaagattgtgaggttcgttcaggagaactgcgagaaagttgga
tcgaggtttggcaggactgctcagcaaaaccgactgacactgaatatgttggtggatatc
tttgtagggtctaaatctgccaaggttcagactggaatgtttggaatgggaggagcctat
tctcggcataatgctgaccgtctcttcaaaaaactggttctggacaacgtcctggaggag
gatctctacatcaccgttaacaaccaagctgtgtcgtatatctctgctggacccaaagcc
cagaacgtgctgtctggacacatgcagatcgagttctatgagaccgagagtgcgtctagc
gtcaggaaacagaaagctgctgtgggcaagaacgtctccgcgagagaggagaaggttcag
gagtgtctaaaggagctgacagatctgtgcaagcagctggggaaagcgtttggcattcac
tatttcaacatcttctctactgcgaccttgaaaaagatagctgagaagctttcttctgac
cccgaagtcctcctacaaattgatggtgtgacggaagacaaactggagaagtatggagct
gaagtcattcaggtcctagataaatactctgagtggcagctgcctgaggaacagacggac
accgctggagacgggtggatagacacggcacaaggccgctcatatggagataacgaggac
gacacagagtcctccacgtacttccatagtcagtccgcacagggacagaagagaaagaag
gctccgttcttcaaatattccaaaaagagaaaaagtggcaactctaaaggtcgtggctac
agcagcaataaatcgtggtcatcgtccagctccagaggcggatcaaatgctgcaggccgt
gggtccaggagctcaacgggagatgcatcagcgagcaggagaccgggcttcatgagtgtc
ccggcccctcaaaccaaccagcgacctttcttaaagccggccttttctcacctgggctag
DBGET
integrated database retrieval system
