KEGG   Cyclopterus lumpus (lumpfish): 117732967
Entry
117732967         CDS       T09199                                 
Name
(RefSeq) tripartite motif-containing protein 72-like
  KO
K10652  tripartite motif-containing protein 25 [EC:2.3.2.27]
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:clum00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    117732967
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:clum04121]
    117732967
Enzymes [BR:clum01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117732967
Ubiquitin system [BR:clum04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    117732967
SSDB
Motif
Pfam: PRY SPRY zf-RING_UBOX zf-C3HC4_4 zf-B_box zf-C3HC4 ANCHR-like_BBOX zf-C3HC4_3 zf-RING_2 zf-C3HC4_2 zf-RING_5 RING_XB3-XBAT31 U-box zf-UBR REV1_C zf-RING_10
Other DBs
NCBI-GeneID: 117732967
NCBI-ProteinID: XP_034392083
LinkDB
Position
7:5340196..5344389
AA seq 552 aa
MSLSKPEEQLAHELSCPICLQLFSDPVVLPCGHNYCWACIRKTADRTDKAPHCCPECREE
YQGVDTLKKNFKLCSIIEGYQATAAQTERQPERQPESLKENEPETTKVLCDHCIDKESPA
VKTCLSCEVSLCSGHLQRHQEKEWLRAHTVVEPLGELGTNSCGVHRRPLEYFCSNDMSLM
CGTCFIEGHHQNHDVLTFGAAEEEMRRALENRTKVVSYRLQVIESLLQKTAQEQGASEAI
GDKLVDKAVTVMECMAALVDRYRESLRVLLEEERYRRRRSWQLGLSALEEQQQQLVEAQR
SAAQALSETDTCIFIHRFVLIDGRLREVVTGSLPSGIPSKAPLDAKRLQVGLKTQDFRSE
MSGLLDSLHILLNPLDLAFNVCTAHPSLLVSNDQRTVKYSPTKQPYAEHPERFTSAPQVL
CSQGFSSGEHVWVVEVGANSMWSLGVCYKSIPRRGDHSRLGHNSVSWRLQWKNGKLTVCQ
SSCNVALGEMSHHPLRIEIALDYEAGTLMFHNIRGRREHLHTFRAVFREPVYPAFSLHSN
TPESWFTLHNGM
NT seq 1659 nt   +upstreamnt  +downstreamnt
atgtctttgtccaagccggaggagcagctagcccacgagctgagctgccccatctgcctc
cagctcttctccgatccggtggttctcccctgtggccacaactattgttgggcctgcatc
cgcaagaccgccgacaggacggacaaagcacctcactgttgcccggagtgccgcgaggag
tatcagggtgtggacaccctgaagaaaaacttcaagctctgcagcatcatcgagggctac
caagccaccgcggcgcagacggaaaggcagccggaaaggcagccggaaagcctgaaagag
aatgagcccgagacgacgaaggttctctgcgaccactgcatcgacaaggagtcgccggct
gtgaagacgtgcctgagttgtgaggtgtcgctgtgctccgggcacctccagaggcaccag
gagaaggagtggctgagggcgcacactgtggtggagcccctgggtgagctggggacgaac
agctgcggcgtccaccggcgtcccctcgagtatttctgttccaatgacatgagcctgatg
tgcggcacatgcttcatagaaggccaccaccagaaccacgatgtcctcaccttcggcgcg
gccgaagaggagatgagacgggcgttggagaaccgcaccaaggtggtttcctacaggctg
caggtgatcgagagtctccttcagaagacggctcaggagcagggagcatccgaggctata
ggggacaaactggtcgacaaggcggtgactgtcatggagtgtatggctgcactggtggac
aggtacagggagagtctgcgcgtgctgttggaggaggagaggtacaggcgcaggagaagc
tggcagttgggactcagcgcactcgaagagcaacagcagcagttagtggaggcccagaga
agtgccgcgcaggccctcagcgagacagacacgtgcatcttcatacacaggttcgtgctg
attgacggcaggctgagagaagttgtcaccggcagccttccctccgggatcccctcgaaa
gcgccgctcgacgccaagcgtctccaggtgggcctcaaaacccaagactttcgctccgag
atgagcggcctcctggattcccttcacatactcctgaaccccctggacctcgccttcaac
gtctgcaccgcccaccccagcctgttggtctcaaatgaccagcggaccgtcaagtacagc
cccaccaagcagccatatgcggaacacccggagcgcttcacaagcgcgccccaggtcctg
tgcagccaggggttctcgagcggggagcacgtgtgggtggtagaggtgggggccaacagc
atgtggtcgctgggcgtgtgctacaagagcatccctcgccgcggggaccacagccgcttg
ggccacaactccgtttcctggcggcttcagtggaaaaacggcaagctgacggtgtgccag
tcctcctgcaatgtggctctgggggaaatgagccaccatccgctgaggattgagattgcg
ctggactacgaggcggggacattaatgttccacaacatcagagggcgcagggagcacctg
cacaccttcagggctgtgttcagggagccggtttatccggcgtttagtttacattcaaac
acaccggagtcctggttcacgctgcacaatgggatgtaa

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