Cyclopterus lumpus (lumpfish): 117732967
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Entry
117732967 CDS
T09199
Name
(RefSeq) tripartite motif-containing protein 72-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117732967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117732967
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117732967
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117732967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-B_box
zf-C3HC4
ANCHR-like_BBOX
zf-C3HC4_3
zf-RING_2
zf-C3HC4_2
zf-RING_5
RING_XB3-XBAT31
U-box
zf-UBR
REV1_C
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
117732967
NCBI-ProteinID:
XP_034392083
LinkDB
All DBs
Position
7:5340196..5344389
Genome browser
AA seq
552 aa
AA seq
DB search
MSLSKPEEQLAHELSCPICLQLFSDPVVLPCGHNYCWACIRKTADRTDKAPHCCPECREE
YQGVDTLKKNFKLCSIIEGYQATAAQTERQPERQPESLKENEPETTKVLCDHCIDKESPA
VKTCLSCEVSLCSGHLQRHQEKEWLRAHTVVEPLGELGTNSCGVHRRPLEYFCSNDMSLM
CGTCFIEGHHQNHDVLTFGAAEEEMRRALENRTKVVSYRLQVIESLLQKTAQEQGASEAI
GDKLVDKAVTVMECMAALVDRYRESLRVLLEEERYRRRRSWQLGLSALEEQQQQLVEAQR
SAAQALSETDTCIFIHRFVLIDGRLREVVTGSLPSGIPSKAPLDAKRLQVGLKTQDFRSE
MSGLLDSLHILLNPLDLAFNVCTAHPSLLVSNDQRTVKYSPTKQPYAEHPERFTSAPQVL
CSQGFSSGEHVWVVEVGANSMWSLGVCYKSIPRRGDHSRLGHNSVSWRLQWKNGKLTVCQ
SSCNVALGEMSHHPLRIEIALDYEAGTLMFHNIRGRREHLHTFRAVFREPVYPAFSLHSN
TPESWFTLHNGM
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgtccaagccggaggagcagctagcccacgagctgagctgccccatctgcctc
cagctcttctccgatccggtggttctcccctgtggccacaactattgttgggcctgcatc
cgcaagaccgccgacaggacggacaaagcacctcactgttgcccggagtgccgcgaggag
tatcagggtgtggacaccctgaagaaaaacttcaagctctgcagcatcatcgagggctac
caagccaccgcggcgcagacggaaaggcagccggaaaggcagccggaaagcctgaaagag
aatgagcccgagacgacgaaggttctctgcgaccactgcatcgacaaggagtcgccggct
gtgaagacgtgcctgagttgtgaggtgtcgctgtgctccgggcacctccagaggcaccag
gagaaggagtggctgagggcgcacactgtggtggagcccctgggtgagctggggacgaac
agctgcggcgtccaccggcgtcccctcgagtatttctgttccaatgacatgagcctgatg
tgcggcacatgcttcatagaaggccaccaccagaaccacgatgtcctcaccttcggcgcg
gccgaagaggagatgagacgggcgttggagaaccgcaccaaggtggtttcctacaggctg
caggtgatcgagagtctccttcagaagacggctcaggagcagggagcatccgaggctata
ggggacaaactggtcgacaaggcggtgactgtcatggagtgtatggctgcactggtggac
aggtacagggagagtctgcgcgtgctgttggaggaggagaggtacaggcgcaggagaagc
tggcagttgggactcagcgcactcgaagagcaacagcagcagttagtggaggcccagaga
agtgccgcgcaggccctcagcgagacagacacgtgcatcttcatacacaggttcgtgctg
attgacggcaggctgagagaagttgtcaccggcagccttccctccgggatcccctcgaaa
gcgccgctcgacgccaagcgtctccaggtgggcctcaaaacccaagactttcgctccgag
atgagcggcctcctggattcccttcacatactcctgaaccccctggacctcgccttcaac
gtctgcaccgcccaccccagcctgttggtctcaaatgaccagcggaccgtcaagtacagc
cccaccaagcagccatatgcggaacacccggagcgcttcacaagcgcgccccaggtcctg
tgcagccaggggttctcgagcggggagcacgtgtgggtggtagaggtgggggccaacagc
atgtggtcgctgggcgtgtgctacaagagcatccctcgccgcggggaccacagccgcttg
ggccacaactccgtttcctggcggcttcagtggaaaaacggcaagctgacggtgtgccag
tcctcctgcaatgtggctctgggggaaatgagccaccatccgctgaggattgagattgcg
ctggactacgaggcggggacattaatgttccacaacatcagagggcgcagggagcacctg
cacaccttcagggctgtgttcagggagccggtttatccggcgtttagtttacattcaaac
acaccggagtcctggttcacgctgcacaatgggatgtaa
DBGET
integrated database retrieval system