Cyclopterus lumpus (lumpfish): 117733028
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Entry
117733028 CDS
T09199
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clum01009
]
117733028 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117733028 (hdac6)
04131 Membrane trafficking [BR:
clum04131
]
117733028 (hdac6)
03036 Chromosome and associated proteins [BR:
clum03036
]
117733028 (hdac6)
Enzymes [BR:
clum01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117733028 (hdac6)
Protein phosphatases and associated proteins [BR:
clum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117733028 (hdac6)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117733028 (hdac6)
Membrane trafficking [BR:
clum04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117733028 (hdac6)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
117733028 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
117733028
NCBI-ProteinID:
XP_034392207
Ensembl:
ENSCLMG00005000208
LinkDB
All DBs
Position
7:complement(24612887..24631961)
Genome browser
AA seq
1050 aa
AA seq
DB search
MKSGSDSPDPDPGLQSVRRSPRLSPQSAEGKEERKGGGSLKEMKRRGRMERSREEEELLD
SLQTLHVSSRSEVRSTGLVYSEIFTLYENLWDSSHPERPARVTSIMEELDRQDLLSHCTR
VQPREAVEEELLLAHKKQYVDLMKSTQTMTESELHSLSEKYDSVYLHPESYRVCVSAVGS
VLQLVDQVMTSELRNGFAVVRPPGHHAQSNEANGFCIFNNVAIAARYAQTRHSVRRVLIV
DWDVHHGQGSQYRFQEDPSVLYFSVHRYEHGSFWPHLPESDSQFIGTGRAEGKTINLPWN
KTGMTDADYIAAFQQLLLPVAYEFQPQLVLVSAGFDAAVGDQKGGMCVTPQCFHILTHML
MSLAEGRLVLALEGGYNLQSTAEGAAACVRALLGGACPPLTPPTAPSDSALQSISQTVVA
LYPHWAALQTLGGGPLAEGLVKRATANQQSSKRTGPAPSVATVTGLVYDEKMMEHLNMWD
RHHPEQPQRIFKIFSKHQQLGLVDRCQRIPARLATEEELSRCHSEQHIEQMKASVLMKPR
ELHKLGHEFNSVFINNQSFQSALLAAGGCFTAVERILTGQVSRGVAIVRPPGHHAERDSP
CGFCFFNTAALAARHAQQISHDAPLRVLIVDWDVHHGNGTQHMFEDDDSVLFISLHRYDN
GTFFPSSEDAAPDRVGVSKGAGFNVNVAWSGGRMGDSDYLAAFHSVVMPIATEFNPGLVL
VSAGFDAARGDPLGGYHVTPEGYAHLTHLLMSLAGGRVLLILEGGYNLTSISDSMAMCTS
VLLGDPPPPLVMPLPPPHHSAVATINEVIRHHAPYWMSLRIRVPESARSSLPATKHRGKR
SSKGKGRKSETSSAHKPPLPSAGPDDATTERGLEQLTQGLASLDIGQSPANHTPATSNAV
GGARPKVRLSQEEVTCEGEVTPEQSQSAESTLLQPQTPLYVVDPLSWCPHLDAVKPLPPS
GIDVFQSCQDCGSSAENWTCLTCYQVLCGRYVNEHMVTHGVVSEHPMVLSFCDLSVWCYL
CESYVHHQILFEAKNAAHCCKFGEEIPPWS
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctggatcagattctccagatcctgatcctggactacagtcagtcaggagatct
ccccgtctgtctcctcagagcgctgaaggaaaggaggaaaggaaaggaggaggcagtctg
aaggaaatgaagaggagaggaaggatggagaggagtcgagaggaagaggagctgctcgac
agcctgcagacgctgcacgtgtccagcaggtcagaggtcagatcaacaggtctggtttac
tctgagatcttcactctctatgagaacctgtgggactccagtcacccagagcgacccgcc
agagtgacatccatcatggaggagctggacagacaggacctgctgtctcactgcaccaga
gttcagcccagagaagctgtagaagaagagctgctgctcgctcacaagaaacaatatgtg
gacctgatgaagtcgactcagacgatgacagaaagtgaacttcattctctttctgagaaa
tacgactctgtgtatcttcatcctgagtcctaccgggtgtgtgtgtcggcggtgggttcg
gtcctccagctggtcgaccaggtgatgacctctgagctcaggaacggattcgctgtcgtc
agacctccaggtcatcacgctcagtctaacgaggccaacggtttctgtatcttcaacaac
gtggcgatcgcagctcgatacgctcagaccagacactccgtccgcagggtgttgatagtg
gactgggatgttcatcatggtcagggcagccagtaccggttccaggaagacccgagtgtc
ctgtacttcagtgtccacaggtatgaacatggctctttctggcctcacctgccagagtct
gacagtcagttcatcggcaccggacgagctgaaggcaaaaccatcaacctgccgtggaac
aagacggggatgacggatgctgattacatcgcagcttttcaacaactgttactgcctgta
gcctacgagtttcagcctcagctggttctggtttctgctggatttgatgctgcagtcgga
gatcagaagggggggatgtgtgtgactcctcagtgttttcacattctgacccacatgttg
atgagtctggctgaaggtcgacttgttctcgctctcgagggaggttataacctgcagtcg
acagcagagggcgctgcagcctgtgtcagagctctgctgggaggagcctgtcctcctctg
accccgcccactgctccctctgacagtgctctgcagtccatctctcagacggtggtggct
ctgtatcctcactgggcggctctgcaaacactgggaggcggcccattggctgagggcctc
gtcaagagagcgacggccaatcagcagagctcaaagcggacgggcccggctccctctgtt
gccacggtaacgggtctggtttacgacgagaagatgatggagcacctgaacatgtgggat
agacatcatcctgaacagcctcagagaatctttaaaatcttctccaaacatcagcagctg
ggattggtcgatcgttgccagcggataccggctcgcttagcaacagaggaggagttgtcc
aggtgtcacagtgagcagcacattgagcagatgaaggcctcagtgctgatgaagcccaga
gagctccacaaactgggtcacgagttcaactccgtcttcatcaacaatcagagcttccag
tctgctctgctggcggctggaggatgtttcactgctgtggagagaatcctcacaggacag
gtgagtaggggcgtggccatcgttcgtcctcccggtcatcacgcagagagagattctccg
tgcggtttctgtttcttcaacacggcagctcttgccgcacgccacgcccagcaaatatcc
catgatgcaccgctgcgagtcctcatcgtggactgggacgtacaccacggcaacgggacg
cagcacatgttcgaagacgacgacagcgtcctgttcatttccctccatcgctatgacaac
gggacgttcttcccgtcttcggaggatgccgcccccgacagggtaggcgtgtccaagggg
gcggggttcaacgtcaacgtggcgtggagcggtggccggatgggagactcggactacctg
gctgcctttcacagcgttgtcatgccgattgccaccgagtttaatccgggtctggttctg
gtgtcggccggtttcgatgcagctcgaggggatccactggggggatatcatgtgacccct
gaaggatacgcccatctcacacacctgctgatgtcactggccggggggcgggtcctactc
atactggagggaggttataacttgacgtccatctctgactccatggcgatgtgcaccagc
gtgctattaggagaccctcctccacccttggtgatgcccctcccccctccccatcacagc
gccgtggcaacaatcaacgaggtcatccgacaccacgccccctactggatgtcgctgagg
atacgcgtcccagagtcggcgcggtcttccctgccggccacgaagcatcgtgggaaacgt
agttctaaaggaaaaggcaggaagtcggagacgagcagcgcgcacaaacctccgctgccg
tctgcgggaccggacgacgccacgacggagcgcggcctcgagcagctcactcagggattg
gccagtttggacatcggtcaaagcccagccaatcacacgcctgctacgtccaacgcggtg
ggcggggccaggccgaaggtccgtttgagccaagaagaggtcacgtgtgaaggtgaagtg
acacctgagcagagccaatcagcagagagcacgctgctgcagcctcagacccctctatac
gtggtggaccctctctcctggtgtcctcacctggatgcggttaagcccctccccccctca
ggcatagatgtcttccagtcgtgtcaggactgcggctccagcgctgagaactggacctgt
ctcacatgctaccaggtgctgtgtggtcgttatgtaaatgagcacatggtgactcacggc
gtcgtgtctgaacacccgatggttctgagcttctgtgatctgtctgtgtggtgctacctg
tgtgagtcctacgtccaccaccagattctgtttgaagctaaaaacgctgctcactgctgc
aagtttggagaagagatccctccatggagctga
DBGET
integrated database retrieval system
