Cyclopterus lumpus (lumpfish): 117733376 Help Entry 117733376         CDS       T09199                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism clum  Cyclopterus lumpus (lumpfish) Pathway clum04510   Focal adhesion clum04512   ECM-receptor interaction clum04518   Integrin signaling Brite KEGG Orthology (KO) [BR:clum00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117733376    04518 Integrin signaling     117733376  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     117733376  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:clum00536]     117733376 Glycosaminoglycan binding proteins [BR:clum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117733376 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  117733376 NCBI-ProteinID:  XP_034392869 LinkDB All DBs Position 7:complement(20744923..20763433) Genome browser AA seq 1483 aa AA seqDB search MFGFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC DSGAVLCDEIICEEIRECANPLIPSGECCPICPADAKTIGAQGQKGEPGEIADVVGPKGP RGPMGPSGEQGGRGEAGAKGDKGNIGPRGRDGEPGIPGNPGAAGPPGPAGLGGNFAAQMA GGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGEAGEPGPAGALGPRGP SGPSGKPGSDGDAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGETGA AGAKGESGSSGENGASGPMGPRGLPGERGRSGAAGSAGARGNDGLPGPAGPPGPVGPAGA PGFPGSPGSKGEAGPTGIRGSEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGAKGSAGG AGIAGAPGFPGPRGPPGPQGATGSLGPKGQSGDPGLPGFKGEAGPKGELGPIGPLGGPGP AGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGTPGDRGVPGAAGPKGV GGDPGRTGESGLPGARGLTGRPGDAGPQGKGGPSGAAGEDGRPGPPGPLGARGQPGVMGF PGPKGANGAAGKGGEKGLVGRPGLRGLSGKDGETGSSGPSGPAGPAGERGEQGQPGPSGF QGLPGPSGAPGEGGKPGDQGISGEGGVPGAVGPRGERGFPGERGGAGAQGLQGPRGLPGT PGSDGPKGAIGPSGSAGSQGPPGLQGMPGERGTGGITGAKGDRGDNGQKGPEGASGKDGG RGLSGPIGPPGPSGPNGAKGETGITGPNGATGVRGAPGDRGEVGPHGPAGFAGPPGSDGQ PGAKGELGESGQKGEGGSPGPQGPSGAPGPVGPTGVTGSKGARGGQGAPGATGFPGAAGR VGSPGPNGNPGSAGPAGSSGKDGPKGARGDTGLTGRHGDAGLRGAPGLQGEKGEAGEDGP PGVDGPSGPMGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGSSGSSGDRGPPGPVGP PGLTGPSGETGREGTAGSDGPPGRDGALGVKGERGNTGPAGAPGAPGAPGSTGPVGPLGK QGDRGEGGAQGPAGPSGPSGARGMAGPQGPRGDKGESGEVGERGQKGHRGFTGLQGLPGP PGSAGDSGAAGPAGSSGAKGPSGPSGPAGKDGSNGQLGPIGPPGPRGRSGESGPAGPPGN AGPPGPPGPPGPGIDMSAFAGLGQIEKSPDPLRYMRADEASSSLRQHDVEVDSTLKTLNS QIENLRSPDGSQKNPARTCRDLKLCHPEWKSGNYWVDPNIGSIADAIKVFCNMESGETCV SASIAEVPKKNWWTSKGKDRKHVWFGETMNGGFHFNYAEDGPIANAASVQLTFLRLLSTE ATQNLTYHCKNSVAYMDQATGNLKKALKLQGSNDVELRAEGTSRFTYTVLEDGCKKHTDR WGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL NT seq 4452 nt NT seq  +upstreamnt  +downstreamnt atgttcggctttgtggattcaaggactgttctgctacttgtagcatcccaagttgtttta ctatccgtggtcagatgtcaggaagaggacgaccaggaggcaggtggctgcatccaggac ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgcatctgtgtgtgc gacagcggagcggttctgtgtgatgagataatctgcgaggagatcagagaatgtgccaac cctctcatcccatctggagagtgctgtcccatctgccctgctgatgccaagacaattggt gctcagggccaaaaaggtgaaccgggagagattgcagatgtcgtaggaccaaaaggacca cggggcccgatggggccctcaggtgagcagggaggacgcggagaagccggcgctaagggt gataagggaaatatcggacctcgtggaagggatggcgagcccggcatacctggaaacccc ggagccgccggcccacctggaccagcaggactaggagggaactttgctgctcagatggct ggaggtttcgatgagaagtccggaggcgctcagatgggcgtgatgcagggcccgatgggt cccatgggccctcgtggtccccccggaccaagtggagctcctggcccacaaggtttccaa ggtggccctggagaggccggagagcctggtcctgctggagcactgggacctcgtggacca tctggaccttctggaaaacctggaagcgatggcgatgctggcaaacctggtaaagctggt gagcgtggacctgcagggcctcagggagctcgtggattccctggaactcctggacttcct ggaatcaaaggacacagaggtcatcctggtctggatggagctaagggagagaccggtgcc gcaggagccaagggtgagtctggttcctctggagagaacggcgcctccggacccatgggt ccacgtggtcttcccggtgagagggggcgttcaggagccgccggatctgcaggtgcccgt ggaaatgatggcttgcccggtcctgctggtccacctgggcctgtcggtcctgctggagct cccggtttcccaggatctccaggatccaagggagaagctggtcctactggaatccgtgga tctgaaggagcacagggacctcgcggagagtccggtaccccaggatcccctggaccctcc ggagcatcgggcaaccccggtactgatggtattcctggagctaaaggatctgctggcggc gctggtattgctggtgcccctggattccccgggcctcgtggcccacctggaccacaggga gccacaggatctctggggccaaagggacagtctggagaccctggtctacctggattcaaa ggtgaagctggacccaagggagagcttggccccattggtcctctcggaggccctggtccc gccggtgaagaaggaaagagaggcgccagaggagagcctggaactgccggacccctcgga cctccaggagagagaggtgctcctggtaaccgtggtttcccaggtcaggacggtcttgct ggtgctaagggtacccctggtgatcgtggtgttcctggtgctgctggacccaaaggtgtt ggcggagatcctggacgcacaggagagtccggcctccccggagccagaggtctcaccggt cgtcccggagatgctggtcctcaaggcaaaggtggaccctctggtgctgctggtgaggac ggtcgcccgggcccacccggccctctgggagcccgtggacagccaggagtgatgggattc cccggaccaaagggagccaatggtgccgctggaaagggaggagagaagggtctcgtgggt cgtcctggtttgagaggtctgtctggaaaagatggtgagaccggttcttctggaccttct ggccccgctgggcccgctggagagagaggagagcaaggacagcccggaccttctggcttc cagggtctgcctggaccatctggtgccccgggagagggaggaaaacctggagaccaaggt atttctggagagggcggcgttcctggtgctgttggacccagaggggagcgtggtttcccc ggtgagaggggtggtgctggagctcagggtcttcagggacctcgtggccttcccggaaca cccggatctgatggacccaagggagccattggaccttctggctctgctggatcccagggc ccccccggcctgcagggtatgcctggagagagaggaaccggtggaatcacaggagccaag ggagacagaggtgacaacggacagaaaggacccgagggagcttctggaaaggacggtgga agaggtttgagtggtcccatcggtcctcctggcccatctggacccaacggcgccaagggt gaaactggaattactggccccaatggtgctactggtgttcgtggtgctcctggtgaccgt ggagaggtcggtcctcatgggcctgccggctttgctggacctcctggttcagatggccag cctggtgctaagggagagctcggtgagtctggacagaagggagaaggtggttctcctgga cctcagggaccatctggagctcctggacctgtgggacccaccggtgtaactggatctaaa ggagcacgtggtggtcagggtgctcctggtgctactggtttccctggtgctgctggcaga gttggatctcctggccccaatggcaaccccggttccgccggccccgctggctcttccggt aaagacggaccaaagggtgctcgtggtgataccggcctcacgggaagacacggagacgct ggtctccgcggagctcccggcttacagggagagaagggagaggccggagaggacggacca cctggtgtcgatgggccttcaggtcctatgggtctgggtggatctcgcggtattgttggc ttgccgggtcagcgtggagagagaggtttcgccggtctccccggaccttctggagagcct ggtaaacaaggatcttctggatcttctggcgaccgcggacctcctggacctgtgggaccc cctggacttactgggccttctggagagactggcagagagggtaccgctggatccgatgga cctcctggtagagacggagctcttggagtcaagggagagcgaggtaacaccggtcccgct ggcgcccccggagcacctggtgcccccggatccaccggacctgtcggacccctcggcaag cagggagacagaggagagggcggcgctcaaggacctgcaggaccttctggacccagcggc gctagagggatggctggaccccaaggaccacgtggggacaagggagagagcggcgaggtt ggagagaggggacagaagggccaccgtggcttcaccggtctgcagggtcttcctggaccc cctggttccgccggcgactctggagccgccggacctgccggatcaagcggagctaaggga ccatctggaccgtccggacctgctggcaaagacggatcaaacggacagcttggccccatt ggaccccccggacctcgtggacgttctggagaaagtggtcctgctggtccccctggtaac gccggaccccctggcccacctggtcctcctggcccgggcatcgacatgtcggccttcgcc ggtctgggtcagatcgagaagtcccccgatcctctcaggtacatgagggccgacgaggcc tccagctccctgaggcagcacgacgtggaggtcgactccacgctgaagacactcaacagc cagattgagaacctgcgcagccccgacggcagccagaagaacccggctcgcacctgcaga gacctgaaactgtgccaccccgagtggaagagcggtaactactgggttgatcccaacatc ggcagcatagctgatgccatcaaggtcttctgcaacatggagagcggagagacctgcgtc tccgcaagcatcgccgaggtaccgaagaagaactggtggaccagcaagggcaaggaccgc aaacacgtctggttcggagagaccatgaacggaggattccacttcaactacgctgaagac ggccccatcgccaacgctgccagtgtccagctgaccttcttgaggcttctgtccactgaa gcgacccagaacctcacgtaccactgcaagaacagcgttgcctacatggaccaggccacg ggcaacctgaagaaggccctgaagctgcagggctccaacgatgtggagctccgcgcagag ggcaccagtcgcttcacatacaccgtgttggaggacggctgcaagaaacacactgaccgg tggggcaagactgtctttgagtacaaaacacagaagacctcccgtctgccaatcgtggac attgctcccatggacatcggaggagcggatcaggagttcggagtcgaagtaggcgcggtc tgcttcttgtaa

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