Cyclopterus lumpus (lumpfish): 117733506
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Entry
117733506 CDS
T09199
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117733506 (ddx20)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117733506 (ddx20)
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
117733506 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-GeneID:
117733506
NCBI-ProteinID:
XP_034393101
Ensembl:
ENSCLMG00005008550
LinkDB
All DBs
Position
7:complement(26447138..26454586)
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AA seq
741 aa
AA seq
DB search
MAASVRKAAHDIETRKRTDDVLLSEGLDFSSLLLSRPVLDGLSSSGFRKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTVALDSLVLENPATQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVSQDKTHLKRCHVAVGSPGRIKQLIELSMLSTASIRLFVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYPESLAKHLTRYMREPTFVRINPSDMGLKG
LKQYYKLVQSHPLPHKIFQEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADVLSSKGLP
AACISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCGVSLSTLPSAIEPGLMDEPCDWDVCT
AASTLGTSCQLSSRTQKKKKQRDADQPMEHSGQRSRENTVPTAGPETTKATPGEDALPRR
RPPPPPPPAAPTRKELQDALPKIPPLGSFKSRRSRFVTFEDAERDFRGFITTGPGRSVEV
IREFGGGEDGDPSIGHRESFTLDDHDGGECLNLKGERWKADFSPSRAVSGSSNSQHNDSE
RNRTRGGEYEQMPPGSKPKVDPSAYGAFAAPAPQKFHQTSRGSAPPLPERCEARPSVEPS
GPKTGRRGSRKMAEKTSEQRSDEDEWSAEAYWRASYRAWNDYYASVTPFQERGHQSYYSA
AHSWMAAYRMNAVYMQELLKH
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccgtgaggaaagcagcccacgacatagagacgcggaagcggaccgacgat
gtgcttctttcggagggactcgacttcagctcgctgctgctctctcgtcccgttctggac
gggctgtcctcctcgggcttccggaagccttccccgatccagctcaaggcgatcccgctg
ggccgctgcgggctcgacttgatcgtgcaggccaagtccggcacggggaagacgtgcgtg
ttctgcaccgtcgctctggactctctggtcctggagaatcctgcaactcaggttctcgtg
ttggctcccacacgggagatcgcggtgcagatccactcggtggtgatggccatcggctgc
gccatggagggcctcgagtgccacgttttcatcgggggccggcctgtgagccaggacaag
acccacctgaagaggtgccacgtggcggtgggctcgcccggtcgtatcaagcagctcatc
gagctgagcatgttgtccaccgccagcatccggctgtttgttctggacgaggcagataag
ctgctggaagagggcagcttccaggaccagatcaactggatcttctcctctctgccagtg
aacaaacagatgctcgcgctctccgccacctacccagaatcccttgctaagcacctcacc
cgctacatgagagagcccacttttgtccgaatcaatcccagtgacatgggcctcaaaggt
ctgaagcagtattacaagctggtgcagtcccatcctttgcctcacaagatctttcaggag
aaagtgcagcacttgttggagcttttcagtaaaatcccattcaaccaggctctggtgttc
tccaacctacacaccagggctcagcacctggcagacgtcctgtcctccaaaggcctaccg
gctgcttgcatctcaggcggtctgagtcaggaccagagactggaggccatgtccaaactg
aagcagtaccagtgcagggtgctcatctccaccgacctgacctccagaggcatcgatgca
gagaaagtgaacttggtgataaacctggatgtgccgcaggactgggagacctacatgcac
cggatcggacgcgctgggcgttttggcactcaggggctggctgtgacctactgttgccat
ggcgaggaggagaataagatgatggccattgctcagaagtgcggcgttagtttatccacg
ttgccgtccgccatcgagccggggttgatggacgagccgtgtgactgggacgtctgcacc
gcagcatccactctgggcacttcatgccagctctcctcccggacgcagaagaagaagaag
cagcgtgacgcggatcagccaatggagcacagcggtcaaaggtcgcgggagaataccgtc
ccaacggccgggccggagacaacaaaagcaactcccggcgaggacgctctcccgcggagg
cgtcctcctcctcctcctcctccggcggcaccaactcgcaaggagctgcaggacgctctg
ccaaagatcccgcccctcggctcgttcaagagccgtaggtcaaggttcgtgacctttgag
gacgccgagcgggacttccgcggcttcatcacgacggggccggggagatcggtggaagtc
atcagggagtttgggggcggcgaggacggcgacccgagcatcgggcaccgagagtccttc
acgctcgacgaccacgacggaggtgaatgtttgaatctcaagggagaacgctggaaagct
gacttttcgccttccagggcggtttccggttcttcaaactcgcaacacaacgacagcgag
aggaatcggaccagaggtggcgaatacgaacaaatgccccctgggtccaaaccgaaggtg
gacccctccgcatacggagcttttgcggctcctgcgccccaaaagttccaccagacgtca
cgagggagcgctccgcctctgccagagagatgcgaggcaagacccagcgttgagccgagc
gggccaaagaccggcagacgcggatccagaaagatggcggagaagacttcagagcagagg
agtgatgaagatgagtggagtgctgaggcttactggagagccagctacagagcctggaac
gattactacgcctccgtgactcctttccaagagcgaggtcaccaaagctactacagcgcc
gcccacagctggatggcagcgtatcgcatgaacgccgtctacatgcaggagctgctgaag
cactga
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