Cyclopterus lumpus (lumpfish): 117733547
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Entry
117733547 CDS
T09199
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04020
Calcium signaling pathway
clum04260
Cardiac muscle contraction
clum04261
Adrenergic signaling in cardiomyocytes
clum04270
Vascular smooth muscle contraction
clum04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117733547
04020 Calcium signaling pathway
117733547
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
117733547
09153 Circulatory system
04260 Cardiac muscle contraction
117733547
04261 Adrenergic signaling in cardiomyocytes
117733547
04270 Vascular smooth muscle contraction
117733547
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117733547
Ion channels [BR:
clum04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117733547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
117733547
NCBI-ProteinID:
XP_034393185
Ensembl:
ENSCLMG00005005216
LinkDB
All DBs
Position
7:complement(12766393..12784635)
Genome browser
AA seq
1828 aa
AA seq
DB search
MAANADDKLVIMNEEELKRKQREKLKKLQATGGNPRPARTLFFFNLKNPFRKACTSIVEW
KTFEIIILLTIFANCIALAVFTPMPEEDTNNTNTSLESLEYIFLIIFTLECFLKIVAYGL
VFHEGAYLRNCWNILDFVIVFMGLFTFALDTINKIAGVPMEKGGGFDMKALRAFRVLRPL
RLVSGVPSLQVVMNSILKAMLPLLHIALLVFLLVTIYAIMGLELFKCKMHKTCYYTGTNI
YSIAEGEPPSPCAQAGNGRRCMINGSECRPGWEGPNNGITHFDNIGFAMLTVYQCITMEG
WTKVLYWVNDAMGNEWPWVYFVPLILLGSFFVLNLVLGVLSGEFTKEREKARSRGEFQKL
RERQQLDEDVHGYMEWITYAEVLDADREGKGLLPLTRDSDTDSLYDLDGKSRIVYYYRLA
RRWNRFFRMKCLVYVKTKSFYWLVMFLVLLNTLTIATEYHHQPDWLTSIQDVASRMLLVL
FVVEMFVKMYALGPRGYFMSLFNRFDFFVVLCGILEMIMFSAGAVAPLGFSVLRCIRLLR
ILKVTKYWTSLSNLVASLLNSVRSIASLLLLLFLFIVIFSLLGMQVFGGKFNFTDHRPRR
SNFDNFPQALISVFQILTGEDWTTIMNNGIMAYGGPVFPGIMVAIYFIILFVCGNYILLN
VFLAIAVDNLAEAESLTSAQKEKAEENLKRKLRRSKMPEKTDEDRERIAKKLAEQRAKME
VMPTTAKLKIDEFESNVNEVKDPFPPDDFPGDDEEVEPDIPMSPRPRPMADLQLKEEAVP
LPEASSFFIFGPQNKIRKLCYKIINASSFTNLILLFILLSSISLAAEDPIDPKSYRNKIL
AYADIVFTTVFTIEIVLKMTVYGAFMHEGSFCRNSFNILDLIVVGVSLLSMGMESSAISV
VKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIVLVTMLLNFMFSCIGVQLFKG
KFYSCTDSSKMTGEECQGLFVKHMENSQQDTVLAKREWLNNDFNFDNVLNGMLALFTVST
FEGWPKLLYRAIDSDEEDMGPVFNNRVDVSIFFIVYIILIAFFMMNIFVGFVIVTFQKQG
EQEYKDCELDKNQRQCVQYALKARPLRCYIPKNPYQYRVWYIVTSCYFEYLMFFLIMLNT
LCLGMQHCNQSDHVTKLSDTLNVIFTVLFTVEMILKLMAFKARGYFGDPWNVFDFVIVIG
SVVDVILSEVDSALAASGGLYCLHGCAETNPLQAIAASENASVSITFFRLFRVMRLVKLL
NRSEGIRNLLWTFIKSFQALPHVALLIIMLFFIYAVIGMQIFGKVALVDGTQISRNNNFQ
TFPQAVLMLFRCATGEAWQEVMMASMYGKKCDPKSDFLPGEEFTCGSNFAVFYFLSFYCL
CAFLILNLFVAVIMDNFDYLTRDWSLLGPHHLDEFKKIWAEYDPEATGRIKHLDVVTLLR
RLQPPLGFGKFCPHRAACKRLIGMNMPLNSDGTVTFNATLFALVRTALKIKTEGNFEQAN
EELRAIIKSIWKRTSMKLLDQVIPPIGDDEVTVGKFYSTFLLQDHFRKFLKRQEEYYGYR
PSKKNASGPEIQAGLRSTDEEVAPEMHRAISGDLQNEEEMDKAMEEAGEEGIYHRTHDLF
GNRVDSFSTEPVNTQSQQMTNQRPLKFSESQSESPPNSAALVPTMEFFPTIAPKSNTNNN
AFAEYSFDREGSPEEFYNLREDSEPGNLRSWNFTVRTDKTQFPYDPNYDESQRTAADQLV
QEALVKGGLASLAKDPGFVSVTKEEMADAMHTTVDEMESVAQSILRERADSVTSVKKRRP
VPPADPAVRRKRRPIPMIPSVQEEDAKV
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaatgcagatgacaagctggtcatcatgaatgaagaggagctgaagaggaaa
cagagagagaagctgaagaagctacaggccacagggggaaaccctcgacctgcgagaacc
ctcttcttcttcaatctcaaaaaccccttccgcaaggcctgcaccagcattgtggagtgg
aaaacctttgagatcatcatcttattgaccatctttgcaaactgcattgctttggccgtg
ttcacgcccatgcctgaggaagacaccaataacaccaacacaagcttggagagtttggag
tacatcttcctgatcatattcacgttagagtgctttctgaagatagtggcgtatgggctt
gtgttccatgaaggcgcctatttacgcaactgttggaacatattggactttgtcatcgtc
ttcatgggtctcttcacctttgccttggataccatcaataagatagcaggcgtgccaatg
gagaaaggcggggggtttgacatgaaggcactgagagccttcagagtgctgcggccctta
cgtctcgtctctggagtccccagcttgcaggtggtgatgaactccatcctgaaagccatg
ctgcctctgctgcacattgcccttctggtctttttactggtcaccatctatgccatcatg
ggactggagctattcaagtgcaaaatgcataaaacctgctattacactggcacaaacatc
tattccatagcagaaggcgagccaccgtcaccctgtgctcaggctggtaacggacgccgc
tgcatgatcaacggctctgagtgtcggccaggctgggagggtcccaacaatggcatcacc
cactttgataacattggctttgccatgcttacagtctaccaatgtatcaccatggaggga
tggaccaaagttctctactgggttaatgatgccatgggaaatgaatggccctgggtctac
tttgttcccctcattctgctggggtccttttttgtgcttaatttggttctgggggtgctc
agtggagaatttaccaaagagcgagagaaggcccggtcgcgtggagagttccagaagttg
cgagagcgtcagcaactggatgaagacgtgcacggctacatggagtggatcacttatgct
gaagtcctggatgctgaccgagagggcaaaggactcctgcctttgacccgcgactctgac
acggacagcctgtatgacctggatggcaagagccgaattgtctactactatcgcctggcc
cgtcgctggaaccgtttcttccggatgaagtgtctggtgtatgtgaaaaccaagagcttc
tactggctagtgatgtttctcgtcctcctcaacaccctgaccatagcaacagagtaccac
caccagcctgactggctcacgtccatacaagatgtggccagtcgtatgctgctggtgctg
tttgtcgtagagatgtttgtgaagatgtatgctctgggtccacgaggatatttcatgtcc
ctatttaaccgctttgacttctttgtggtgctatgcggtatcctggagatgatcatgttc
tctgcaggagccgtggctcccttgggtttctctgtactccggtgtatccgattgctgagg
attcttaaagtcacaaagtactggacctctttgagtaatcttgtggcttctctcctcaac
tctgtacgctccattgcctccctgctccttcttctcttcctcttcatcgtcattttctca
ctcctgggaatgcaggtgtttggggggaaattcaactttaccgaccacagacccagacgc
agtaactttgacaacttccctcaggccctcatcagtgtttttcagatcctaacaggagag
gactggaccaccataatgaacaatggcattatggcctatggagggcctgtctttcctggc
atcatggttgccatctactttatcatcctctttgtctgtggaaactatatcctcctcaat
gtcttcttggccattgccgtcgacaacttggccgaggctgagagtttgacttcagctcag
aaagaaaaggcggaggagaatttaaaaagaaagttacgaaggtccaaaatgcctgagaag
actgatgaggacagggagaggatagctaagaaactggcagagcagagagccaagatggag
gtcatgcccacaacagctaagctcaaaattgacgagtttgagtccaatgtcaatgaggtg
aaagatcctttcccacccgacgacttcccaggtgatgacgaggaggtagagcctgacatc
cccatgagtcctcggcctcgaccaatggccgacctgcagctgaaggaagaagccgttccg
ttgcctgaagccagctcctttttcatttttggccctcagaacaagatccgtaaattgtgc
tacaagatcatcaacgcctcctccttcaccaatttaatccttttgttcatcctgctctcc
tccatctccctggcagctgaggaccccatcgatcccaagtcctacagaaataagatattg
gcctatgctgacattgtcttcacaactgtgttcaccattgaaattgtactaaagatgaca
gtttatggagcattcatgcacgagggctccttctgtcgcaactccttcaacatcctggat
ctgattgtggttggagtctctctgctttctatggggatggaatccagtgccatctctgtg
gtgaagattctcagggtgctgagggtgttgaggcctctcagggccatcaatagagccaaa
gggttaaagcatgtggtccaatgcgtgtttgtggccatcaaaaccatcggcaacatcgtc
ctggtcaccatgctgctaaatttcatgttttcctgcatcggagtgcagctcttcaagggt
aaattctacagctgcacagactcgtcaaaaatgacaggggaggaatgccagggactcttc
gtgaagcatatggagaattcccaacaagatacagtgttggctaaaagagaatggctcaac
aatgacttcaactttgacaatgtgctcaatggcatgctggctctcttcactgtttccaca
ttcgagggatggccaaaactgttatacagagccattgattcagacgaagaagacatgggt
cctgtcttcaacaatcgcgtagatgtgtccatcttcttcatcgtctacatcatcctcatt
gccttcttcatgatgaacatctttgtgggcttcgtcattgtcactttccagaagcagggt
gaacaggagtacaaagactgcgagctggacaaaaatcagcgccaatgtgtgcagtacgcc
ctgaaggctcgacccctgaggtgctacatccccaaaaacccataccagtacagagtctgg
tacattgtcacttcctgctactttgaatacctcatgttcttcctaattatgctcaacacc
ttgtgtctggggatgcagcactgtaaccagtccgaccatgtgaccaagctgtcagacact
ctgaacgtgatcttcaccgtgcttttcactgtggagatgattctcaagctcatggccttc
aaagcgaggggctactttggtgacccctggaacgtctttgacttcgtcattgtcatcggt
agtgtcgttgatgtcatccttagcgaagtcgatagcgccctggctgccagtggaggactg
tactgtctccatggctgtgctgaaacaaatcctctgcaagcaatcgcggcgtctgaaaat
gcctcagtctccatcacgttcttccgactcttccgtgttatgcgtctggtcaagctgttg
aaccgttcggagggcatccgtaacctgctgtggacctttattaaatccttccaggcactt
cctcatgtagcattgctcatcataatgctcttctttatctacgctgtcattgggatgcag
atctttggaaaggtagccttagtggatggcacgcaaatcagccgcaacaacaacttccag
acattccctcaggcggttctgatgttattccggtgtgctactggagaggcttggcaggag
gtcatgatggcttcaatgtatgggaagaagtgcgaccccaagtctgacttcctgccaggt
gaggagttcacctgcggttccaacttcgctgtcttctacttcctcagcttctactgtctc
tgcgccttcctgatactcaacctgtttgtagctgtcatcatggacaactttgactacctc
acccgtgattggtctcttcttggtccacaccatctggatgagtttaagaagatctgggct
gaatatgaccctgaagccacggggagaatcaagcatctggacgtggtgacgctgctgcga
cgcctgcagcctccactcggctttggcaagttctgtcctcatcgtgctgcatgcaagcgc
ttgatcggcatgaacatgcctctcaacagtgacggcaccgtcacctttaacgccaccctg
tttgctctcgtcaggacggcactcaagatcaaaacagaaggtaactttgagcaggccaac
gaggagctgagagccattataaaatcaatctggaaacgcaccagtatgaaactgttagac
caggtcatcccacctattggagatgacgaggtgactgtggggaaattctactccaccttc
ctgcttcaggatcatttccgcaagtttttgaagcgccaagaggagtactatggctaccgg
ccctcgaagaagaatgcctcaggcccagagatccaggcgggcctgaggagtacagacgaa
gaggttgctccggagatgcacagggccatttctggagacctgcagaatgaggaagagatg
gacaaagctatggaagaggctggagaagaaggcatctaccatcgtacacacgacctgttt
ggtaatcgggtggactcgttctctactgagcccgtcaacactcagtcccagcagatgacc
aaccagcggcccctcaagttctccgagagccagtctgagtctccaccaaactctgctgcc
ttggtgcccactatggaatttttccccacaatcgcaccaaaaagcaacactaacaacaac
gcctttgcagaatattcatttgatcgagaaggcagtccagaagagttttacaatctcagg
gaggattcggagccaggtaacctgcgctcctggaacttcacggtgagaacagacaaaacg
cagttcccgtatgaccctaactatgatgaaagtcagcgtactgcagcggaccagctcgtc
caggaggctcttgtaaagggcggcctggcctccctggccaaagaccccggctttgtctct
gtgactaaggaggagatggcagacgccatgcacacaactgttgatgagatggaaagcgtg
gctcagagcatcctcagagaacgtgctgacagcgtcacttctgtcaaaaagagacgtccc
gtccctcctgcagatccagctgtgaggagaaagagacgtccaatccccatgattccctcc
gtacaggaggaagacgccaaagtttag
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integrated database retrieval system
