Cyclopterus lumpus (lumpfish): 117733635
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Entry
117733635 CDS
T09199
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
117733635 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117733635 (xpc)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
117733635 (xpc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Nop53
Motif
Other DBs
NCBI-GeneID:
117733635
NCBI-ProteinID:
XP_034393312
Ensembl:
ENSCLMG00005019886
LinkDB
All DBs
Position
7:8173976..8185336
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AA seq
933 aa
AA seq
DB search
MAKRRGGAETEAGTKRLKPVAQARSGGAEKKDAGDVITEEEEELKRKIKPKPRGSTKRAS
GNTSATTSATAVKTSKYFQSPVKEEECDSDDDFDMVTSAPPAVTVSAKETKKEEEEYEEE
EDDEDEEEEEEEEDSEEDEDDWEEVEELSGPLGPVGPSEPVLPSQPVEIEIETPEVRKKQ
KRQAELETYMRRMVNRYKKDVLIDTHKVHLLCLIASGIFRGRQCSEPDLLAITLSLLPTH
FSMVAKERIDHNYLTGLLKWFSSTFTLNACLPCEERQNPRTLLERRLASLSARNHQEMTH
LFLLVLRSLQFFCRLVISLQPIPLKPPSAKGQGARTSTGAPGKSNTSQQPSKTASPEQKI
SPGTKRPAGGAKITGGRGGKKARTKEIKEECDEVKKKPKTSGGQRPKNSKRRSIASKVSY
KEESESGEEKEEELSEEEEFQATSEKDSEVSEGGAKSTKWKKGKRKSKANANKRRSSGGE
KQIKDEEGKEWEEEEEEEGTVHNRTKRRSGRKNKGPGADEWLEVFLVKTSSWVCVDVERG
VGMPHLCSQNATTPMTYVVSVDGDGFVKDLGRKYDPTWLTSSRKRRVDEEWWEETLGSFL
GPEDERDKKEEKELQNKLLNKPLPISITEYKNHPLYALKRHLLKYEAVYPSTATVLGYCR
GEPVYSRDCVQTLHSKDTWLKEARTVRLGEEPFKMVRGFSNRSRKARMASERKEENDLAL
FGEWQTEEYQPPIAVDGKVPRNDYGNVYLFKPCMLPVGCIHLQLPNLHRVARKLNMDAAP
AVLGFDFHAGYSHAVTDGYIVCEEHEEILRAAWLEDQEIQKQKEKEKKEKRVLSNWTLLV
KGLLIRERLKQRYGKKNHGLGSLAETGGLSSDEEEVEAGNPSAKTASETLAMSWPQNRQA
EEDGGSISGLKRKTTTKREKRGQEKHLFPFEKV
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcggagaggaggtgcggagacagaggccggtacaaagaggctgaagccagtg
gcgcaggcgcggagcggcggagcggagaagaaagatgcaggtgatgtcatcacagaggaa
gaggaggagctcaagaggaagatcaaacccaaaccacgtggctccacaaaacgagcgtcg
gggaacacctccgccaccacatctgcaactgctgtcaaaaccagtaaatacttccagtcg
ccagtgaaggaggaggagtgtgacagtgacgatgactttgacatggtgacctcagcacca
cctgcggttacagtgagcgccaaggaaaccaagaaagaagaagaagaatacgaagaagaa
gaagatgatgaggacgaggaggaagaggaggaggaggaggacagcgaggaagatgaggat
gattgggaggaagtggaagagctttctgggccgctgggtccagttggaccatcagaaccc
gtcctgccctcccagccggttgagatagagatcgagactccagaagtcaggaaaaagcag
aagaggcaggccgagcttgagacttacatgaggcggatggtgaaccgatacaagaaggac
gtgctgatagacacacacaaggtccacctgctgtgcctgatagccagcgggatattccgc
ggccgtcagtgcagtgaaccggacttgctggccatcactctgtcgctgttgcccacccac
ttcagcatggtcgccaaggagcgcatcgaccacaactacctcaccggactgctcaaatgg
ttcagttcaacgttcaccctcaacgcctgtcttccctgtgaggagcgtcagaacccccgc
actctgctggagaggcggctggccagcctgtctgccagaaaccaccaggagatgactcat
ctgtttctgttggtcctgaggtctctgcagtttttctgccgattggttatttctttgcag
ccgattcctctcaaacccccttcagccaagggccaaggggctagaacatctaccggtgcc
ccaggaaagagcaacacaagccagcaaccctccaagaccgcctctcctgagcagaagatc
tctcctggcaccaagagaccagctggaggggcgaagatcacgggaggccgagggggaaag
aaagcaaggacgaaagaaataaaggaggagtgtgacgaggtaaagaagaagcctaaaaca
tcgggagggcagagaccaaagaactccaaacgtcgcagtatcgcctccaaagtcagctac
aaggaagaaagtgagagcggagaagaaaaggaggaggagcttagcgaagaggaggaattt
caggcgaccagtgagaaagatagtgaggtttcagagggaggagctaaatccacaaagtgg
aagaaggggaaacgaaagagcaaagccaacgcaaacaagagaaggagtagtggaggagaa
aaacagatcaaagacgaggagggcaaagagtgggaggaagaggaggaagaagaaggaacc
gtacacaaccgaactaagcgaaggagtgggagaaagaataaggggcctggagcggacgag
tggttggaggtgtttctggtgaaaacgtcatcctgggtctgcgtagacgtggagcgcggt
gtcgggatgcctcacctctgctcccagaatgcaacaacgccgatgacgtacgtggtgtct
gtggacggagacggctttgtgaaggacttgggaaggaagtacgaccccacctggttgaca
tcttccaggaagaggcgggtggatgaggagtggtgggaagagacgcttggctccttcctc
ggacccgaggacgagagggacaaaaaggaggagaaggagctccagaacaaactgctgaac
aaacccctgcccatctcaataacggagtataagaaccacccgctgtatgccttaaagaga
cacctgctgaaatatgaagccgtctacccatcaaccgccactgtactgggatactgccgg
ggagagccggtgtactcaagggattgtgtgcaaacgctccactccaaagacacttggttg
aaagaggcacggacggtccgactaggagaggaaccatttaagatggtgaggggcttctct
aatcgttcccgcaaagccaggatggcgtctgagcggaaggaggagaacgacctggctctg
tttggggaatggcagactgaagagtaccagccgccgatagctgtggatgggaaggttccc
cgtaacgactatggcaacgtctacctgtttaagccctgtatgctaccggtgggctgtatt
cacctccagctgcccaacctgcaccgcgtggccaggaagctgaacatggacgccgcccct
gcggtcctgggcttcgacttccacgcaggatactcgcatgctgtgactgatggttacatt
gtgtgtgaggagcatgaggagattctcagagcggcctggttggaagatcaagagattcag
aaacagaaggagaaagagaaaaaagaaaaaagggtgctctccaactggactctgctggtg
aaggggctcctgatcagagaaagactgaagcagcgctacggaaagaagaaccacggactc
gggagcctcgcagagactggtgggctttcgtcggatgaggaggaggttgaggccggaaac
ccttcagccaagacggcgtctgagactctggccatgtcctggccccagaacagacaggcg
gaggaggacggagggagcatcagcggactgaagaggaagaccacgacaaaacgagaaaag
agaggacaagagaaacacttgttcccctttgagaaagtgtga
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