Cyclopterus lumpus (lumpfish): 117733653
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Entry
117733653 CDS
T09199
Name
(RefSeq) collagen alpha-1(XIV) chain
KO
K24357
collagen type XX alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
117733653
NCBI-ProteinID:
XP_034393333
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Position
7:4268852..4282733
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AA seq
995 aa
AA seq
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MEPGPTADPALSYPSPTDLRFSELGSREVQLHWINPAKPIRQHRVVYHSAEGQSPQEVVL
AGSESTVLLEGLSSQTLYHVSIFPVYEDNVGLALRGTVTTLPLTMPADLEVTPYSYSTLR
VSWGSAPGATQYMILYSALNHGEPDDAKEEKFSGDQTAVELAGLLPATDYSVTLYALYDE
DPSDPVTAVATTLHLPAPASVHFPMVTHSMLRVSWVPGAVDVPGHRIIYSTNHGSDVKQV
EVAGLNSVVVQNLSSLSRYLVSVQSHYPLGLSAALTSNVTTLKVPSPSDFRVTNFSGSDI
TVRWEAAADDVVSYLIKWISLSGGDLRQLRAGGESEGAILEGVENDKEYQISLSALYGDG
AQSEAVATRYSTLSGGGPSSISVTEETAVSLVVGWVPPNAHVLQYRVSYTALTAAESQDS
TVLVPGGEKRVALESLQPDTRYSILVTAEYRNREGGSGSTQGKTTSLRVSSVSVVRSDHS
SICVSWRPVSAVDGYRIVVQSVKDKQAKEETVDESSSSHCFTDLEPETLYRISVHSLLGA
AEGAAVSILHPTATAPSRIPIQPWMYPIHNEVCPEVTIRHSIVKGFDMMEAFGLTERAHS
SVEGVAAEPFVFNALPTFTLYRDVQLTQSTKFIHPAGFSPEHTISIAFRVLQDTPREPFA
LWQLTDNDFQPKMGVVLDPTTKHLVYFSLDYRGEVQELTFDQLEVHRLFYGSFHKVHLSV
SQVSVSLSVDCQRVGERPARPLGNLPTDGFEMLGKLVKTRGPNSGSAPFQLQSFEIVCNT
TWALEDTCCDLPGVRDEESCPVPAYSCTCSSDIPGASGSPGPNGRPGPRGEKGEKGEQGP
KGEVGPPGKPGLEGGLGALGSTGPRGMAVQGKAGPPGARGGKGDPGRPGVQGLPGPPGPA
GEVGPPGPQGIRGLEGNIGGPGLTGPRGFQGMPGHPGPIGDRGFSGTVGPTCAPGECHFA
GPLEPSGASEADLLMEKGHHPISDVVLFHTHIGIP
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggagcctgggcccacagctgaccctgccctctcctaccccagtcccaccgacctccgc
ttctctgaactgggctccagagaagtccagcttcactggatcaatcccgcgaagccgatc
cgacaacacagagttgtctaccacagcgccgagggtcagagcccacaggaggtggtattg
gccggctcagagtccactgtgctgctggaaggcctctcctctcagacgctgtaccacgtg
tccatcttccccgtgtacgaagacaacgtcggcctggcgctcagaggaactgtcacgaca
ttgcccctgaccatgcctgccgacctggaggtgactccttattcttacagcaccctgagg
gtgagctggggctcagcacccggtgccacacagtacatgatcctgtactcggcactcaac
cacggggagcctgatgacgccaaggaggagaagttcagtggcgaccagacagcggtggag
ctggcagggttactgccggcaacagactactccgtgactctttatgctctgtatgatgag
gatcccagcgaccccgtcactgctgttgccaccacattacatctcccagcgccagcgagc
gttcatttcccgatggtcacccacagcatgctgagggtgagctgggtgcccggagccgtg
gacgtgcccggtcacagaatcatctacagcaccaaccacggcagtgacgtcaagcaggtg
gaggtagcgggactgaactcagtggtggtgcagaacctctcttccctctccagatatctg
gtttcagtccagtctcactacccactaggcctgtctgcagcactcaccagtaacgtcacc
acactgaaggtgccttccccatcagacttcagggtgactaatttctcaggcagtgacatc
accgtgcgctgggaggcggccgccgatgacgtcgtctcttacctcatcaagtggatctcc
ctcagtgggggagacctgagacagctgagggcgggtggggagagcgaaggggcgatcctg
gagggggtggagaacgataaggaataccagatctctttgtctgcactttatggagacgga
gctcagagtgaagcggtggccacgcgctatagcaccctgtctggcggaggcccatccagc
atatcggtcaccgaggagacggccgtcagcttggtggtcggctgggtccctccgaacgct
cacgtgctccagtaccgtgtgtcctacacggcgctgactgcagctgaaagccaggacagc
accgtgctggtcccgggtggtgagaagcgggtggcgctggagtcgttgcagccagatact
cggtacagcatcctggtcaccgccgagtaccgcaacagagagggaggcagcggttccact
cagggaaaaaccacaagtctgcgggtgagcagtgtgagcgtggtccggtcagaccactcc
agtatctgtgtgtcttggaggcccgtgtcggctgtcgatggatatcgtattgtcgttcag
tccgtcaaagacaagcaagcaaaggaagagactgtggatgagtccagcagcagtcactgc
ttcactgatctggaaccagagactctgtatcgcatcagcgtgcactcccttctcggcgca
gcagagggcgccgccgtttccattctccatccaacagccacagctccttccagaattccc
atccagccctggatgtaccccatccacaacgaagtctgccctgaagtcaccatcagacac
agcattgttaaaggatttgacatgatggaagccttcggtctgacggagagagctcactcg
tctgtggagggcgtggcagccgagccctttgtgttcaacgccctgcccaccttcactctg
tacagagacgtccagctgacacagagcaccaagttcatccaccctgcaggtttctctcca
gaacacaccatcagcatcgccttccgcgtgttgcaggacactccccgggagcccttcgcc
ctctggcagctcaccgacaacgacttccagcccaagatgggagtggtgctcgaccccacc
accaagcatctggtgtacttcagtctggactacaggggagaagtgcaggaactgaccttc
gaccagctggaggtccaccggctgttctacggcagtttccacaaggttcacctgtcggtc
agccaggtgagtgtgtccctgtccgtggactgccagcgtgtgggcgagaggccggcccgc
cctctcggtaacctaccgaccgacggctttgagatgctgggcaaactggtgaagaccaga
ggacccaatagtggatccgcaccgttccagctgcagtcctttgagatcgtctgcaacacc
acgtgggctttagaggacacctgctgcgacttgcccggagtgagagatgaggagagctgt
cccgtcccggcgtactcctgcacctgctcctccgacatccccggagcctccggttcccct
gggccaaatggaaggccaggtcctcgtggtgagaaaggcgagaagggcgagcaaggccca
aagggggaggtgggtcctccaggaaagcctggattggagggaggtcttggagccctgggc
agcacagggccccgaggcatggccgtgcaaggtaaagcgggtccacctggtgcaagagga
ggaaagggagatcctgggcgaccaggggtccagggtttaccgggacctccaggtccagca
ggagaggtggggccgccaggccctcagggcattagggggctcgaaggaaacatcggtgga
ccaggtcttactggaccccggggtttccagggaatgcccggacacccggggcctataggg
gacaggggcttctcgggaactgtgggacctacgtgcgccccaggtgaatgccacttcgct
ggtcccctggagcccagcggtgcttctgaagctgatctcttaatggaaaagggtcatcat
ccgatatcagatgttgtcctctttcacacacacatcggcatcccgtga
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