KEGG   Cyclopterus lumpus (lumpfish): 117733783
Entry
117733783         CDS       T09199                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1-like
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
clum  Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:clum00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:clum03041]
    117733783
Spliceosome [BR:clum03041]
 Complex B
  Other components
   Complex B specific factors
    117733783
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_WDR75_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_Nup120_160 Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214 Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_DCAF4 Ge1_WD40 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_VPS8 WD40_RFWD3 eIF2A Beta-prop_IFT80_2nd Beta-prop_DCAF12 Beta-prop_RSE1_1st Beta-prop_IP5PC_F Mala_s_1-like Beta-prop_WDR11_2nd VPS8_N WD_LRWD1 LisH PD40 DUF7165 Phytase Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 117733783
NCBI-ProteinID: XP_034393562
Ensembl: ENSCLMG00005005479
LinkDB
Position
1:complement(16291628..16299289)
AA seq 509 aa
MATEMEPSDVIRLIMQYLKENNLYRTLSTLQEETTVSLNTVESIDSFIADIKSGHWDSVL
LAIESLKLPDNTLIDLYEQVVMELIEMREVGAARSLLRQTDPMIMLKQTQPERYIHLDNL
LTCSYFDPCEAYLKGSSKEKRRRAIAEALVREVSVVPPSRLMGLLEQSMRIQPYADHLPT
DTTVDTSVHRDRQTEKESFPTQLYRHIKFGRRSHVECARFSPDGKYLITGSVDGFIEVWN
FNTGKISKDLKYQAQDSFMMMDDAVMCMCFSQDTDLLATGAQNGKMKVWKVQSGLCLRRF
EHAHNKGVTCLSFSKDNTQILSASFNQTIRIHDLRSGKTLKELNSHSSFVNDAFFTQDGF
HVISASSDGTVKIWNTTSCQCIHTFKSLSRASDDPVNNVIPLPQNPEHFVICNHSSTVVV
MDMNGRTVKSFSSDRKEKANFVCCTLSPRGEWIYCVGEDLVLYCFNYTTGRLQKTLTVHE
KDVIGIAHHPHENLIATYSEDGLLRLWKP
NT seq 1530 nt   +upstreamnt  +downstreamnt
atggctacggagatggagccctcggatgtgatccgcctcataatgcagtacctcaaggag
aacaacctctaccgaacactgagcaccttacaggaggaaacaactgtctcgctcaacaca
gtggaaagcatcgacagcttcatcgctgatataaagagcggccactgggactccgtcctg
ctggctatcgagtccctcaagttgcccgacaacacgctcattgacctctatgagcaggtt
gtaatggagctcattgaaatgagggaggtgggagccgctcgctcactcctcaggcaaact
gacccgatgatcatgctgaagcagacgcagccagagaggtacatccatttggataacctg
ctaacatgctcctactttgacccttgtgaggcgtacctgaaaggcagcagcaaggagaag
cggcgcagggcgatagccgaggcgttggtgagagaggtcagcgtggtgccgccttctcgc
ctcatggggcttctggaacaatccatgagaatacaaccatatgcagatcatctccccacc
gacacgaccgtggacacatctgtccacagagacagacaaacggagaaggagagctttcca
acgcagctgtaccgccacatcaagtttggccggcggtcacatgtcgagtgtgcccgtttc
tctcctgatggcaaatacttaatcactgggtcggtggacgggttcattgaagtctggaac
tttaacactggaaaaattagtaaggatttaaagtaccaggcccaagacagcttcatgatg
atggatgatgctgtgatgtgtatgtgcttcagtcaggatacagatctactggcaactgga
gctcagaatggcaaaatgaaggtgtggaaggttcagagcggcttgtgcctgcgaaggttc
gagcacgcccacaacaaaggtgtgacctgtctgagcttctccaaggacaacacccagatc
ctcagtgcctcctttaaccagaccatcagaattcatgatctgagatcaggcaagacactg
aaggagttaaacagccattcgtcgttcgtaaatgatgcatttttcacccaagatggattc
cacgtcatcagtgcctcatctgatgggacagtcaagatttggaatacaacttcctgccag
tgcatccacacgttcaagtctctgtcccgggcctcagacgaccccgtcaacaatgtgatt
cctcttccccaaaatccagagcactttgtgatttgtaatcactccagcacggtggtcgtc
atggacatgaacggacggacggtgaagagcttcagctcagacagaaaggaaaaggccaat
tttgtgtgctgcaccctgtcaccccgcggggagtggatctactgtgtgggagaggactta
gtgctgtactgcttcaactatacaacaggaagactgcagaaaacgctgaccgttcacgag
aaagatgtaattggcatcgctcaccacccacatgagaatctgatcgccacgtacagcgag
gacggcctcctgaggctatggaaaccttaa

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