Cyclopterus lumpus (lumpfish): 117733835
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Entry
117733835 CDS
T09199
Name
(RefSeq) tripartite motif-containing protein 55-like
KO
K10654
tripartite motif-containing protein 55
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117733835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117733835
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117733835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
RING_XB3-XBAT31
zf-C3HC4_2
zf-B_box
zf-RING_5
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-RING_6
UvrD_C
MRP-S23
DUF445
Motif
Other DBs
NCBI-GeneID:
117733835
NCBI-ProteinID:
XP_034393625
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All DBs
Position
7:complement(15198343..15209716)
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AA seq
704 aa
AA seq
DB search
MRRFHFVLIVAVLVDKSDSVSEHRSPFRKRLILQQQGLGPPCLHSFPPVGLAIRPGSQVA
WHCCWLPAGPRWSGKAKLCSWLEEAPSLSTARRTKAAAKPVLGLSAVGWWLPESELKELL
VNLRAVMLATSEEVKCEMSLPAELSCLQGGGEAEGEAALATLEKQLICPICLELFNKPVV
ILPCQHNLCRKCANELYQPSLFLARTTMQVNSGRFRCPSCRQEVVLDRHGVYGLQRNLLV
ENIIDVYKQEVSNNSNAASPLPPPPPLPAQVTCSDHEGERVNIYCLTCQVPTCSLCKVFG
AHQSCQVTPLTDIYQQKKDELSEGVSSLVAVNDKVQALINELEETCKNIEDNCKTQKQSV
CEKFNRVFSILEERRKVMTQRISSEQEEKTSHAQSLVRCYGDSVEANSKLVERAVSSMEE
SDIAAFVQNSRELITKVITATGSCPSETLKPGCESLSHYIFNFSRQERALKSIDFLKVLQ
NVPEEPEVEKEPEVPRESSVQIVEPKHHQDTSPQNPESVVEPIKELIPTPISPPVKTAAP
TSASVPPAPGLVRDPVEHAWVVLQPETEDPDLNDGESGLMKNNTEDQKEQAEGCAAPGPG
KEGAVCEEQEGMSTQQCETVSDADDWTAQSEAEDKQDAEEEEEEEEEEEDHDLDHDHDHH
PFYPNYKPNSWRRLCSDPTRVPRSVSSGFTFVIINQAIAIFTTC
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgagacgatttcattttgtgttgattgtggctgtccttgtggacaaaagcgatagtgtt
tccgagcatcggagtccctttagaaaacgtctaattttacagcagcagggtctgggtccc
ccttgcctccattccttccctccagtgggcctagcaatacggcctggatctcaagtggca
tggcattgttgttggctccctgcgggaccccgttggagcggcaaggcaaagctctgctcc
tggctggaggaggcaccgtcgctctccaccgcccgccggacgaaggctgcagcgaagccg
gttctgggtctgtctgcggtgggctggtggctgccggagtctgaactgaaagagcttctg
gtgaacctgcgagctgtgatgctcgctacttcagaggaggtgaagtgtgaaatgtctctg
ccggcggagctgagctgcctgcagggcggcggggaagcagagggcgaagcggccctggca
acgctggagaaacagctgatctgtcccatctgtctggagctcttcaacaaaccggtggtc
atcctgccctgccagcacaacctctgccggaagtgtgccaatgagctgtaccagccctcc
ttgttcctggctcgtaccaccatgcaggtgaacagcggtcgtttccgctgtccgtcctgc
agacaggaagttgtgctggatcgtcacggtgtctacggcctgcaacggaacctgctggtg
gagaacatcatcgatgtctacaaacaggaagtcagcaataacagcaacgctgcgagcccc
ctccctcctcctcctccacttcctgctcaggtgacatgttcagatcatgagggtgagagg
gtgaacatttactgtctcacctgtcaggttcctacatgttctctctgtaaagtgttcggg
gctcatcagtcctgtcaggtgactcctctgacagacatctatcagcagaagaaggatgag
ttgagtgaaggagtcagttctttggtggcagtcaacgacaaagtccaggcactgatcaat
gagctggaggagacttgcaaaaatatagaggacaactgtaagactcagaaacaaagtgtg
tgtgagaagttcaatcgtgtgttttcgatccttgaggagagacgaaaggtgatgacgcag
cgaatcagctctgagcaggaagagaagacaagccacgcccagtcgttggtgcgttgctat
ggagacagcgtggaagccaacagcaaacttgtggagagagcagtgagcagcatggaggag
tcagacatagctgcttttgttcagaattcaagagagttgatcacaaaagtgataacagcg
actggctcttgtccatctgaaacactgaaaccaggctgtgagagtttgagccactacata
tttaacttcagcagacaagagagggctctgaagagcatagacttcctcaaagttttgcaa
aatgttcctgaagaaccagaggtggaaaaggagcctgaagtacccagagagtcctctgtc
cagattgtagaaccaaaacaccatcaggacacctccccacagaacccggaatctgttgta
gaaccaattaaagagctaatcccaacaccgatatccccaccagtgaaaacagctgcacca
acatcagcttcagtgccaccagctccaggtctggtgagggaccctgtggagcatgcgtgg
gtggttctgcagccggaaactgaggacccggacttaaatgatggagaatccggtctgatg
aagaacaacacagaggatcaaaaagagcaggccgagggttgtgcagctcctggtcctggt
aaagagggagccgtctgtgaagagcaggaaggaatgagcacacagcagtgtgagacagtt
agtgatgcagatgattggacggcacagagtgaggcagaggacaaacaggatgctgaagaa
gaagaagaagaagaagaagaagaagaagatcatgatcttgatcatgatcatgatcatcat
ccgttttacccgaactacaaacccaacagctggcgcaggctatgctccgatcctacaaga
gtcccaaggtcagtgtcgtctggttttaccttcgtcatcatcaaccaggctattgcaatc
ttcaccacctgctga
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