Cyclopterus lumpus (lumpfish): 117734006
Help
Entry
117734006 CDS
T09199
Name
(RefSeq) embryonic polyadenylate-binding protein A-like
KO
K13126
polyadenylate-binding protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03015
mRNA surveillance pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117734006
09123 Folding, sorting and degradation
03018 RNA degradation
117734006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117734006
03041 Spliceosome [BR:
clum03041
]
117734006
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117734006
mRNA cycle factors
Stress granule specific factors
117734006
Spliceosome [BR:
clum03041
]
Complex C
Other components
Complex C specific factors
117734006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
117734006
NCBI-ProteinID:
XP_034393913
Ensembl:
ENSCLMG00005006743
LinkDB
All DBs
Position
7:complement(22640564..22649531)
Genome browser
AA seq
626 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVLKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDEKGSKGYGFVHFETHEAANRAIETMNGMLLNDRKVFVGHFKSRKERE
MEFGTKAMKFTNVYVKNFGEDYTDEKLKELFTSFGRTLSVRVMKDERGRSRGFGFVNYAN
HEDAQKAVDDMNGKDISGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKN
LDDGIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRREERKAILTNKYMQRLATLRTMTSPVIDSYQQAGYYMAVPQPPARSFYNP
NPVSNMRPVPRWTGQPPRLQGPYPTQYVGTAAPRRGSTPIATVRQASTQAPRAISSSQRT
NNIATQTVGGRTDVPGMTRGGQYKYSPAVRNVQQVVAVPAPMTRIQVFPAPVMEPPVHLQ
GHEPLTTSMLAAAPPMDQKQLLGERLYPVIHSLHPNLAGKITGMLLEIDNSELLHMLETP
ESLHSKVDEAIAVLQAHQAKECSPKK
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggaccagcgtaccccctcgcctctctgtacgtaggcgacctgcacccg
gacgtcacggaggccatgctctaccagaagttctctcctgccggacccatcatgtcgatc
cgggtgtgccgcgacatcatcacccgcaggtctctgggatatgcctacataaacttccag
caaccggctgatgcggagtgcgccctggacaccatgaactacgacgtcctcaagggtcgg
cccatccgcataatgtggtctcagcgtgacccgggactcaggaagtctggcgtgggaaac
atcttcatcaagaacatggacgagtccatcgacaacaaggcgctgtacgacaccttctcg
gccttcggcaacattctgtcctgcaaggtcgtttgtgacgaaaaaggctccaaaggatac
ggattcgttcactttgagacccacgaggctgcgaaccgggccatcgagaccatgaacggg
atgctgctgaacgacaggaaagtgttcgtcggccactttaagtcccgtaaggagcgagag
atggagtttggcaccaaagcgatgaagttcaccaacgtctacgtcaagaactttggtgaa
gactacaccgacgagaaactcaaggaactcttcacgtcttttgggaggacactcagcgtg
cgggtgatgaaggacgagaggggacgctcgcgaggattcggcttcgtaaactacgcgaac
cacgaggacgctcagaaggcggtggacgacatgaacggcaaggacatcagcgggaagatc
ctctacgtgggtcgggctcagaagcgtctggagcgccagggagagctgaagcgcaagttt
gaccaaatcaaacaggatcgcatccagcgctaccagggggtgaacctgtacgtgaagaac
ttggacgacggcatcgacgacgagagactccggaaggagttcgccccgtacggcaccatc
accagcgccaaggtcatgacggacggctcccagagcaaaggcttcggcttcgtctgcttc
tcttcgccggaggaggccacgaaggcggtgacggagatgaacggcaggatcgtggccacc
aagccgctgtacgtggctctggctcagcggagggaggagcgcaaagccatcctgaccaac
aagtacatgcagcgactcgccaccctgaggaccatgacgagtcccgtcatcgactcgtac
cagcaggccggctactacatggcggtgccccagcctccagctcgctccttctacaacccc
aaccccgtcagcaacatgaggccagtccctcgctggaccgggcagcccccccggctgcag
ggcccctacccgacccagtacgtcggcaccgccgccccccggcgcggctcgacccccatc
gccacggtgcggcaggcctccacccaggcgccgcgcgccatcagctcctcgcagaggacg
aataacatcgccacgcagaccgtcggaggccgcaccgacgtgcccggcatgacgcgaggc
ggccagtacaagtactcgcccgcggtgaggaacgtccagcaggtcgtcgccgttcccgcg
cccatgacgaggatacaggtgtttcctgctcctgtgatggagcccccggtgcacctccaa
ggccacgagcccctcaccacctccatgctggccgccgctccgcccatggatcagaagcag
cttctcggtgagcggctctacccggtgatccactccctccacccaaacctggccggaaag
atcaccggcatgctgctggagatcgacaactctgagctgctgcacatgctggagacgccc
gagtcgctgcactctaaggtggacgaggcgatcgccgtcctgcaggctcaccaggcgaag
gagtgctctccgaagaagtga
DBGET
integrated database retrieval system
