Cyclopterus lumpus (lumpfish): 117734563
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Entry
117734563 CDS
T09199
Symbol
fip1l1b
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117734563 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117734563 (fip1l1b)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117734563 (fip1l1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
117734563
NCBI-ProteinID:
XP_034394593
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All DBs
Position
1:5107215..5116098
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AA seq
563 aa
AA seq
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MSAEEADKQTATDASAGDEEEEWLYGDESEGKEEDEEAKLNAAVSAPADALTEDAHATGN
GVASEATGEGEGDAEGDGAGVGEDVDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGAPPV
NLNIKTTGSRPYGQASKMKGVDLDAPGSINGVPVLEADVESFEEKPWRKPGADLSDYFNY
GFNEDTWKAYCEKQKRLRMGLEVSTIGSVTSKITVQQGRTGNDKDMSSLPIHTSKPDFTS
PLNMYNPPISQVPRISPPQWPPGPPPPDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNL
EGNNIQVIAEQTDAEPTPAKIPNFFPPGSIPPNIPPPPFLPPPPNVNAAPPLIPPPRLPI
TVPPPCFPPPPSGPPPAIIPTMDSGHPGGYDGRSVPPYPFPQGAYPPPMSGGVPPPWPPM
MDNTKPWDYYARRDDKREKERERPRERTHEREREREHSPSAISYTSDEERFRYREYQERG
GYVERHRERSSREKEERHRERRHREKEEGRHKSSRSSSSRRRHDSEETDSHRRHKHKKSK
RSKEGKEPSEEISADQENQEVME
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggacaaacaaaccgccaccgatgctagcgctggagacgaagag
gaggaatggctgtacggagatgagtccgagggcaaagaagaggacgaggaagccaaactg
aatgctgcagtcagtgcgcctgctgatgctttaacagaggatgcacacgctacagggaac
ggagtagcctctgaggcgacaggtgagggggaaggtgatgctgagggtgatggtgcagga
gtgggtgaggatgttgacagtgacagcgacagtgatgacgacgacgatgatgtccgcgtc
accattggagacatcaaaacgggagcaccacagtacacaacttatggagctccacctgtc
aatctcaacataaagacaacaggctccagaccgtatggacaagcctccaagatgaaggga
gtggatctggacgctcctggtagcatcaacggtgtaccagtgctggaggcggacgtggag
tcctttgaagagaaaccctggagaaagccaggagcggatctatcggactactttaactat
ggcttcaatgaagacacatggaaggcttattgtgaaaaacagaagagactgcgcatgggc
ctggaggtctctactatcggctcggtgacgagcaagatcactgttcagcaaggcaggaca
gggaacgacaaggacatgtccagtttgcccattcacacgtcaaagccagacttcacgtct
cctctcaacatgtacaacccccctatcagtcaggtccccaggatctctcccccgcagtgg
cccccaggtccgcctcctccggacatgtcctattatacgaagacgagtggtactatagat
gtgatcggtggaggaacggccaccatcagcagggttgaagggcgccgcagacacaatcta
gaaggcaacaatatccaggtgatcgccgaacaaacggacgccgagccgactccagctaaa
attcccaacttcttccctcctggatcaattcctccaaacatccccccacctccgttcctc
cctcctccacccaatgtcaacgctgcacccccgctcatccccccacccaggttgcccatt
actgttcctcctccttgtttcccccctccacctagcggcccccctcccgctatcatcccc
actatggacagtggccaccctggagggtatgatgggcgctctgtccctccctacccattc
cctcaaggcgcataccctccccccatgtccggaggcgtgcctcccccctggccccccatg
atggacaatactaaaccatgggactactacgcccgtcgagacgacaagcgagagaaggag
agggagaggcccagagagaggacacatgagcgggagagagagagggagcacagcccttca
gctataagctacacaagcgacgaggagcggtttcgataccgcgagtaccaggagcgtggt
ggctacgtggagcggcaccgtgagcggtcgagccgagagaaggaggaaagacacagagag
agaaggcacagagagaaggaggagggacgccacaagtcctctcgcagtagcagtagcaga
cggaggcacgacagcgaggagaccgacagccaccggaggcacaaacacaagaagagcaag
aggagcaaggagggcaaagagcctagcgaggagatcagcgcagaccaagagaaccaggag
gtcatggagtag
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