Cyclopterus lumpus (lumpfish): 117734581
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Entry
117734581 CDS
T09199
Symbol
cacna1ia
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117734581 (cacna1ia)
04020 Calcium signaling pathway
117734581 (cacna1ia)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117734581 (cacna1ia)
Ion channels [BR:
clum04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117734581 (cacna1ia)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
117734581
NCBI-ProteinID:
XP_034394621
LinkDB
All DBs
Position
8:7627228..7727995
Genome browser
AA seq
2362 aa
AA seq
DB search
MMSEECPVPLGSISLAGLGQSEEYGFADDIIEEVGPGDDVSIGSDLSTLVLPFPELAPVV
FFCLKQTTCPRNWCIRMVSSPWFERISIMVILLNCVTLGMYQPCENIDCTSDRCQILQAF
DAFIYIFFALEMVIKMVALGIFGRRCYLGDTWNRLDFFIVMSGMVEYSLDLQNINLSAIR
TVRVLRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLRNR
CYLEENFNLSSGMTLPAPYYHLEEDDERPFICSLASDNGIMSCADVPARREGGRTCCLDR
EDALHRQTLGLSPEPLANGSGAGEAVGLCINWNQYYTRCHTGSKNPHKGAINFDNIVYAW
IVIFQVITLEGWVEIMYYVMDAHSFYNFIYFILLIIIGSFFMINLCLVVIATQFSETKQR
EHQLMQEQRAQCLSSSTLASMAEPGDCYEEIFQLVCHVLRKAKRRSAALYYQLRGKPLPA
GGGRGNRRGGGNVNGERHHSRHPKTSQCPHQNKQDNGPQPLANSISLAVPQNPEDCPICA
LSLKEGVRAVGDSPNEEEHEQDAVKETSKDENHLEQKGDGEKKKKRTCFGHCKDIWNDMR
RKLWGIVESKYFSRGIMIAILINTISMGIEHHNQPEELTNVLEICNIVFTSMFTLEMILK
LTAFGFFEYLRNPYNIFDGIIVIISVCEIIGQADGGLSVLRTFRLLRVIKLVRFMPALRR
QLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTEAGDTVPDRKNFDSLLWA
IVTVFQILTQEDWNMVLYNGMASTSPFAALYFVALMTFGNYVLFNLLVAILVEGFQAEGD
ANRSYSDDDRSSCNFEENDKQKDSQHISDPKISTLTPNGHLDLSALHHGLFPGERLTFAL
GSRKNSVISLGRANLEQRAMYPSRSYHNWSHPLPTQPQALWARRSSWNSLGGCRPWSSSS
PSTSPAFTPTSARPFYGYGLGGLGGVVGGSLRIRGPRASSSPRRHHLHHVNQDEEESLLS
PPAVAPNSLHLPHPMLPSHFVPRRDRRALSLELPHLLQVPGPPHPPPLPHLLLPPMTLHA
HHRKKSFSGGMVIGGGGGGGGVGGGLDTLGVLGGVHQDCNGKTPLSQLIQLPPRHHTEQA
GGANPASQLMVDVFPQVNTRSKDREDLDDDIEYSLCFRIEKMLEAYKPDWCESREDWSVF
LFSPQNKFRQICQSIIAHKLFDYVVLAFIFSNCITVALERPKILQGSLERVFLTISNYIF
TAIFVTEMTLKVVSMGLYVGEQAYLRSSWNILDGFLVFVSLIDIVVSMAGGAKILGVLRV
LRLLRTLRPLRVISRAPGLKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFF
YCFGLDIKNITNKSDCLQANYKWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAV
AVDQQPVTNNNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEVEEAKRREEKR
QRRMEKKRRKALKLPYFASYGNIRLMIHTLCTNHYLDLIITFIICINVITMSLEHYNQPH
SLDLALKYCNYFFTSTFVLESVLKLTAFGFRRFFKERWNQLDLAIVLLSVMGITLEEIEI
SSALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIY
AALGVELFGELVCNEDYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPP
DHGTDVDYGCNPSLQFISPMYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEEAEMDA
EIELELAQGTLCCMGAPGCGGGRVDKGLVAAGPGGTAGGNDRGCGERGEGVGRMLHSASS
AHSGAYNSRDSSRTLYSPAQESQWLDSVSLLIKDTLEGEMLMIDNLSGSVFHHYSSPPTI
CRDCKGHPQEQIRMAEVEQASLKSEQLSDKSSSPALPDDLSLDEQTAYQLLAREGKGRCS
SDSRSSEEAAGGGSYAGGHQTRTVVQSQVQGSGQPCRALGTGMEVETTLQHMCSPHCSPG
GVSSSSSNKEINKGGGGASGISPLFHLSAEFFHPTGAAIPAPPRSRSLRLSRGLRLTSPD
SWVSLRSPGAHSKMLCSQYPSHSDSSLATGSSEGSLQTTLEEGLSFSVSPPQNLESPLPT
AHLQLECPLPLPEESPANSSPIQTLRPRTSPSSALTLQATRGHQRSQSSGRGSTSPGYTR
EDSIDPSDEDLGIGIGSSIGGCGSSQAGNSEHLSETLGSLSLTSLLLPPSSLVYPGGGVK
KCNSTGSLDQGGILLSSRGREGRREMLGLELMDPQGFLANPWTGVLVDTRRGEGRVEIGD
GDQGFKGKSSSQTTVGPCRKNR
NT seq
7089 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcgaggagtgtcctgtcccgctggggagcatctccttagcagggctagggcag
agtgaggaatacggctttgctgatgacatcattgaggaagtgggtccaggggacgacgtc
agtatcggcagtgacctgagcactctggtgttgcccttccctgagctggcgcctgtggtc
ttcttctgcctcaagcagaccacctgccctcgcaactggtgcatccgtatggtctccagc
ccgtggttcgagaggattagcatcatggtgatcctgctcaactgtgtgacattgggcatg
taccagccctgtgagaacatcgactgcacctcggaccgctgccagatactgcaggccttt
gatgcattcatctacatcttctttgcattggagatggtgataaagatggtggctctcggg
atcttcggccgtcgctgttacctgggagacacgtggaacaggctggacttcttcatcgtc
atgtctgggatggtagagtattcgctggacctgcagaacatcaacctgtcggccattcgg
acagttcgggtccttcggcccctcaaagccatcaacagagtgccaagtatgcgcatcctg
gtgaacctgctgctggacacgctacccatgctaggcaatgtgctgctgctctgcttcttc
gtcttcttcatcttcggcattattggtgtgcagctgtgggcgggtctactgaggaaccgc
tgctacctggaggagaactttaacctctcttcaggtatgaccctgcctgctccgtactac
cacctggaggaggatgatgaacggcccttcatctgctccctggcgtctgacaatggaatc
atgtcgtgtgccgatgtgccggcgaggcgcgaaggaggacgcacatgctgcctggacagg
gaggacgcactccacagacaaactctgggcttgagtccagagccgctggccaacgggagt
ggtgctggggaagcagtgggtctgtgcatcaactggaaccagtactacacccgatgccac
acaggaagtaagaacccccacaaaggggccatcaactttgataacatcgtctacgcctgg
atcgtcatttttcaggtgatcactctggagggctgggtggagatcatgtattatgtgatg
gatgcccattccttctacaacttcatctacttcattttactcatcattattggttcattc
ttcatgatcaacctgtgcctggtggttatcgccacccagttctcggagaccaaacagcgg
gaacaccaactgatgcaggagcaaagggcacagtgcctgtcatcctccaccctggccagc
atggctgagccaggagattgctacgaggagatcttccagctcgtgtgccatgtcctccgc
aaggctaagaggagatcggcagctctctactaccagctgaggggcaaacccctgccagct
ggaggaggcagggggaacaggcgtggtggaggaaacgtgaacggagagcgccatcattcc
aggcacccaaaaacatctcaatgtccccaccagaacaagcaagacaacggccctcagccg
ctggctaactccatcagtctggctgtccctcagaacccagaggactgccctatatgtgca
ttatcactgaaagagggggtgagggcggtgggagactcccccaacgaggaggaacatgag
caggacgcagtgaaagagacgagcaaggacgagaaccatcttgagcagaagggagatgga
gagaagaagaaaaagaggacatgctttggacattgtaaagacatctggaacgatatgagg
aggaaactttggggcattgtagagagcaagtacttcagcaggggcataatgatcgctatt
ctcatcaacactatcagtatgggcatcgagcatcataaccagccagaggagctgaccaat
gtcctggagatctgcaacattgtcttcaccagcatgttcaccctggagatgatcctaaag
ctgactgcttttggcttctttgagtacctgaggaacccgtataacatctttgatggcatc
attgtcatcatcagcgtgtgtgagatcatcggtcaggcagacggcggtctgtcagtgctg
aggaccttcaggctgctgagggtcattaagctggtgaggttcatgcctgcgctcaggcgg
cagctggttgtgctgatgaagacgatggacaacgtggccactttctgtatgctgcttatg
ctcttcatcttcatcttcagtatcctgggaatgcatatctttggttgtaagttcagtctg
aagacagaggcaggagacacggtgcctgacaggaagaactttgactccctgctctgggcc
atcgtcaccgtctttcagattctgactcaggaggactggaacatggtgctgtacaatggg
atggcatccacctcgccctttgctgctctctactttgtagctcttatgacatttggaaac
tatgtgctcttcaatttactggtcgccatcttggttgagggtttccaagctgagggcgat
gcaaaccgctcatactcggacgatgacaggtcttcctgtaattttgaggagaatgataaa
cagaaagactctcaacatatctcagacccaaagatctctacactaaccccgaatgggcac
ctggacttgtccgcacttcaccatggtctgtttccaggagagaggttgacatttgccctc
ggctccaggaagaacagtgttatttctcttggtcgggccaacttggagcagagggcaatg
tatccaagtcgaagttatcacaactggagtcacccactgcctacccagcctcaggccttg
tgggcccgtcgttccagctggaacagcctgggaggatgccgcccctggtcctcttcgtct
ccctccactagtccagccttcactcccacctctgcaaggcccttctatggctacggcctg
gggggtcttggcggagttgtcggaggaagccttcgtattcggggtccccgtgcctcttca
tcaccgcgccgccaccacctccatcatgttaaccaggatgaggaggagtctctcctctct
cctcccgctgttgctccaaactctcttcaccttcctcatcctatgctgccgagccacttt
gtgcccaggagggaccgtagagctctctcactcgagctgccccacctgctgcaggtccca
ggtccgccgcatcctccacccctgccacacctcctgctgccccccatgacgctccatgct
caccacaggaagaagagcttctccgggggtatggttatcggtggaggtggaggtggtggt
ggtgttggcggtgggctagacactctgggtgtcttaggaggggtacaccaagactgtaat
gggaagactcctctgtctcagcttatccagctccctcctagacaccacactgagcaggct
ggaggggcaaaccccgcgagccagctgatggtcgacgtcttcccccaggttaacacacgc
agcaaggaccgggaggacctggacgatgacattgaatatagcttgtgcttccgcatcgag
aagatgttagaagcgtacaaaccagactggtgtgagagcagagaggactggtctgtcttc
ctattctccccacagaacaaattcagacagatatgccagtccatcatagcccacaagctg
tttgactatgtggtgttggccttcatcttctccaactgcattacagtcgctctggagagg
cccaagatactccagggcagcttggaaagagtctttctcaccatctccaactacatcttc
acggccatctttgtgaccgagatgacactcaaggttgtttccatgggtctgtatgtgggt
gaacaggcttacctgcggagcagctggaacattctggatggcttcctggtttttgtgtct
ttgattgacattgtcgtgtccatggcgggtggggccaagatcctgggtgtacttagagta
ctgcggctgctcagaacattgcgtcccctcagggtgattagcagagctcccggtctgaag
ctggtggtggagaccctcatcacttccctcaaacccattggcaacattgtcctcatctgt
tgtgcgttcttcatcatctttggcattcttggggtgcagctgtttaaaggaaagttcttc
tactgcttcggccttgacatcaaaaacatcaccaacaagtctgactgtctgcaagccaac
tacaagtgggtccaccataagtacaactttgacaacttggggcaggctctgatgtcgctg
tttgtactggcctccaaggacggctgggtaaacatcatgtatcacggcctggacgctgtg
gctgtggaccaacagcccgtgaccaacaacaacccgtggatgctgctgtatttcatctcc
ttcctcctcatcgtcagcttctttgtcctcaacatgtttgttggcgtggtggtggagaac
ttccacaagtgccgccagcaccaggaagtggaagaggccaaaaggcgcgaggagaagcgt
cagcggcgcatggaaaagaagaggagaaaagccctgaagctgccctactttgccagctac
ggcaatatacgcctgatgatccacacactctgcacaaatcactacctggacctcatcatc
accttcatcatctgcatcaacgtcatcaccatgtccttagagcactacaatcaacctcat
tctctggatctcgccctgaagtactgcaactatttcttcacctctacgtttgtgctggaa
tcggtactcaaactcaccgctttcggctttcgccgcttcttcaaggagaggtggaaccag
ctggacctcgccattgtgcttctgtcagtgatgggaataaccctggaggagatcgagatc
agttcagccctgcccatcaaccccactatcatcaggatcatgagagtactgaggatagca
agagtgctgaagctgctgaagatggcgacagggatgagagccctgctggatacggtggtc
caagccctgcctcaggtgggtaacctgggcctgctcttcatgctgctgtttttcatctac
gccgccttaggagtagagctatttggagaacttgtttgcaatgaagactacccgtgtgag
ggtatgagtcgtcacgctacctttgagaactttggcatggccttcctgaccctttttcaa
gtctccacgggcgacaactggaatggcatcatgaaggacacattgagggagtgcccaccg
gaccacggcactgatgtggactatggctgcaaccctagccttcagtttatttcgcccatg
tactttgtctccttcgtgctcaccgcccagttcgtgctcatcaatgtggtggtggccgtg
ctgatgaagcacctggacgactccaacaaggaggcccaagaggaggcggagatggatgca
gaaattgagctggagctggcccagggcaccctctgttgcatgggcgccccaggctgcggg
ggtgggagggtggacaaaggactggtcgctgctggacctggaggcacagcggggggcaat
gacagaggatgtggagagaggggagaaggagtggggaggatgcttcattctgcaagcagt
gcacactcgggagcgtacaactcccgtgactccagccgaactctgtactcaccagcacaa
gagagccaatggctggacagcgtgtctcttctgatcaaggatacactggagggggagatg
ctgatgatcgacaacctctccggttctgtcttccaccactattcttctcctccaaccatc
tgcagagattgcaagggccatccacaagagcagatcaggatggcggaggtagagcaggca
tcgttgaagtcggagcaactgtcagacaagtcctcatcccccgctctgccagatgacctc
agcctggacgaacagactgcctaccaactgctggcgcgagagggcaagggaaggtgcagt
agtgactcccgcagctcagaagaggctgcaggtggaggaagttatgcaggaggccaccag
actcggaccgtggtgcagagccaggtgcaggggtcgggccagccctgccgggccctcggc
actggcatggaggtggagactacactgcagcatatgtgctcacctcactgtagccctggt
ggcgtttccagcagcagcagcaacaaggaaataaacaaaggaggaggaggagccagtggc
atttctcctctcttccatctgtctgcagagttcttccaccctacaggagcagccatccca
gcacctccccgtagtaggagcctacggttgtcgaggggccttaggctgacctccccagac
tcctgggtttcgctgcgctccccaggagcccatagcaagatgctctgttcacagtatccg
tcccacagtgactcctcccttgcgacaggcagctctgaggggagcctccagaccaccctg
gaagagggactgagcttcagcgtttctccaccacagaacttggagtcccctttgccgaca
gctcacttacaactcgagtgcccactcccgttgcctgaagagagccctgccaattcctcc
ccaatccagaccctgagaccaaggacgagcccctcatcagccctcaccctccaggccacc
aggggccaccagcgtagccagagcagtggccgagggagcaccagcccgggttacacccgt
gaagactcaatcgacccctcagacgaggacctgggcataggcataggatcatcaattggc
ggttgtggctccagccaagcgggcaacagtgaacacttgtcagagacgctgggcagcttg
tcgctgacatcgctgctgctgccacccagctcccttgtgtacccaggagggggggttaag
aagtgtaacagcacaggcagcctggaccagggggggatactgctgtcatcccggggccgg
gagggacgcagggagatgctgggcttggagcttatggacccccaaggcttcttggccaac
ccctggacgggggtgttagttgatacaagaagaggagagggacgagttgaaataggagat
ggtgaccaagggttcaaaggcaagagctcaagccaaacaacagtagggccttgtcggaaa
aacagatga
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integrated database retrieval system
