Cyclopterus lumpus (lumpfish): 117734610
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Entry
117734610 CDS
T09199
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117734610 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117734610 (smarca4a)
03036 Chromosome and associated proteins [BR:
clum03036
]
117734610 (smarca4a)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117734610 (smarca4a)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
117734610 (smarca4a)
Chromatin remodeling factors
BAF complex
117734610 (smarca4a)
PBAF complex
117734610 (smarca4a)
GBAF(ncBAF) complex
117734610 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Acetyltransf_18
Motif
Other DBs
NCBI-GeneID:
117734610
NCBI-ProteinID:
XP_034394687
Ensembl:
ENSCLMG00005015175
UniProt:
A0A8C2ZU07
LinkDB
All DBs
Position
8:13390692..13404422
Genome browser
AA seq
1641 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQDNMHQMHKPMEAMHEKGMPDDPRYAQMKGMSMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMMPGGPSGPGAGPMEGSVDPNQGMGQPNRGVPQGPGG
PSVAGGVPGCAGGPAPFNQNQLHQLRAQIMAYKMLARSQPLPDHLQMAVQGKRPMPGMQQ
QPMPNMPLSTGPGVGPGVVPGPAQANYNRPHVMVGPNMVPPGPAGVPPGMQGPPTNGPPK
SWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPTM
MLHQKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIE
LKALRLLSFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIE
QERKRRQKHQEYLNSILQHAKDFKEYHRSITAKLQKATKAIATYHANTEREQKKENERIE
KERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALREKKKK
KKKKKKPATLEGVITSLGPDGEPLDETSQMSDLPVKVIHMDSGKILTGGEAPKAGQLETW
LEMNPGYEIAPRSDSEESGSEEEYEEDEEEEQPHSSATQVVVVEEKKKLPNPDEVDVLHI
IEHAKQDVDDEYGNASFNRGLQSYYAVAHAVTETVDNQSTLLINGQLKQYQIKGLEWLVS
LYNNNLNGILADEMGLGKTIQTIALITHLMEYKRLNGPFLIIVPLSTLSNWVYEFDKWAP
SVVKISYKGSPAARRAFIPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHRMK
NHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNAPF
AMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVL
YRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGYSG
GVVSGPDLYRSSGKFELLDRILPKLRATDHKVLLFCQMTTLMTIMEDYFAYRSFKYLRLD
GTTKAEDRGMLLKTFNDPASEYFVFLLSTRAGGLGLNLQSADTVIIYDSDWNPHQDLQAQ
DRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGCERRAFL
QAILEHEEQDEVGAQEGSRARGQWEEDEVPDDETVNQMIARSEEEFEQFMRMDLDRRREE
ARNPKRKPRLMEEDDMPSWILKDDAEVERLTCQEEEEKLFGRGSRQRKEVDYSDSLTEKQ
WLKAIEEGNLEDIEEEVRHKKTTRKRKRDRDHDGPATPSSSSGRGRDKDEDVKKAKKRGR
PPAEKLSPNPMSLTKKMKKIVDAVIKYKDGTNGRQLSEVFIQLPSRKELPEYYELIRKPV
DFRKIKERIRSHKYRGLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIE
KEDESEGEESEEEEDDLDEGSESESRSVKVKIKLSRKEKGDRGGKGQRRRGRGSRAKPVV
SDDDSEEEQEEERSASGSEED
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctgaccccccgatgggagggacacctcggccgggaccctccccaggccca
gggccatctccaggaggaatgatgggcccgagtcccggtccctctcccggctcagcccat
agcatgatggggcccagcccaggacctcctggatctggacacccgcaccctccacaggga
ccctcaggatatccacaggacaacatgcaccagatgcacaaacccatggaagccatgcat
gagaaggggatgcccgatgacccccggtatgctcagatgaagggcatgagcatgagacca
ggaggacacagtgggatgggaccccctccgagccctatggaccaacactcccaaggatac
ccctctccattgggaggctcagagcacgcgcccagccctgtcccagccaacggccctccc
tctggccccatgatgcccggaggtccctccggccccggggctggccctatggagggcagc
gtggacccgaaccagggaatgggtcaacctaaccgcggggtcccccagggtccaggcgga
cccagtgttgcaggaggtgtgcccggctgtgcaggtgggcccgcgcctttcaaccagaac
cagttgcaccaactcagggctcagattatggcctacaagatgctggcacgaagtcagccc
ttaccggatcacctgcagatggccgtgcaggggaagaggcccatgccagggatgcagcaa
cagccgatgcccaacatgccgctctccacggggcctggtgttgggcctggagttgttccg
ggacccgctcaggccaactacaaccgaccacatgtcatggtaggtcctaatatggtgcct
cctggacctgcaggagttccccctggtatgcaaggcccgcctaccaatggaccccctaaa
tcatggcccgaaggaccaatggtgaatgccgctgccccctccaaccctccccagaagctg
attccaccacaacccactggcagaccctctcccgctcccccctccgttccccccgccgcc
tcccccgtgatgccccctcagacacagtccccaggacagcccgcccagccgcctaccatg
atgcttcaccagaagcagaaccgtataacccccatccaaaagccccgcgggctggacccg
gtggagatcctccaggaaagagagtacaggctacaggctcgtattgctcaccgtatccag
gagctggagaacctgcctggttctctagccggtgacctgcgcaccaaggccaccatcgag
ctcaaggccctgaggctgcttagcttccagagacagctgcgtcaggaggtggtggtctgc
atgcgccgtgacaccgctctggaaacggccctcaacgccaaggcctacaagcgcagcaaa
cggcagtcgctgcgcgaggcccgcatcaccgagaagcttgagaaacagcagaagattgaa
caggaaaggaaacgtcgccagaaacaccaggaatacctcaacagcatcctgcagcacgcc
aaggatttcaaggagtaccaccgctccatcaccgcgaagctccagaaggccaccaaagcc
atcgccacctaccacgccaacaccgagcgcgagcagaagaaagagaacgagcgcatcgaa
aaggagaggatgcgcaggctgatggctgaagatgaagagggctaccgtaaacttatcgac
cagaagaaagacaagcgtctggcctacctgctgcagcagacggacgagtatgtggccaac
ctcactgagctggtgcgcgcccacaaagctgtgcaggctctcagagagaagaaaaagaag
aagaagaagaagaagaagccagcaactctggaaggtgtcattacctccctgggaccagat
ggagagcctttagatgagaccagtcaaatgagcgaccttccggtgaaggtcatccacatg
gacagtgggaagatcctgactgggggggaagcaccgaaggctggccagctagagacctgg
ctggaaatgaacccaggatacgaaattgcaccgcgctccgacagtgaagaaagcggttca
gaagaagagtatgaggaggatgaagaagaggagcaacctcattcctctgcgactcaagta
gtagtagtagaggagaagaagaagcttcccaacccggatgaagtggatgtcctgcacatc
atcgaacacgccaagcaggatgtcgatgacgagtacggcaatgcaagtttcaaccgaggc
ctgcagtcctactacgctgtggcccacgccgtcaccgagacggtggataaccagtccacg
ctgctgatcaacgggcagctcaagcaataccagatcaaaggtttagagtggctggtgtcg
ctttacaacaacaacttgaatggcatcctggcagatgagatgggtctggggaaaacgatc
cagaccatcgccctcatcactcacctcatggagtacaagcgcctcaacgggcccttcctc
atcattgtacctctctcaactctatcaaactgggtctacgagtttgataagtgggcccca
tctgtcgtaaaaatctcatacaagggctctccagctgctcgtcgtgcattcattcccatc
ctgcgcagcggcaagttcaacgtgctgctcaccacgtacgagtatattatcaaagacaag
caggtgctggcaaagcttcgctggaagtacatgatcgtggacgagggccatcgcatgaag
aaccaccactgtaagctgacccaggtcctgaacactcactacttggccccgcgccgcgtg
ctgctcacaggcacaccgctgcagaacaagctgcccgagctctgggccctgctcaacttc
ctcctgcccaccattttcaagagctgcaccacattcgagcagtggttcaacgcccccttc
gccatgactggagagaaggttgacctgaatgaagaagagaccattctgatcattcggcgt
ttacacaaggtgctcaggccgttcctgctgcgccgactcaagaaagaagtcgaggctcag
ctaccagagaaggtggagtacgtgattaaatgcgacatgtcagccctgcagagggttttg
tacagacacatgcaggccaagggagtgttgctcacagatggatcagaaaaggacaaaaag
ggtaaaggtggcacgaagaccctgatgaacactatcatgcaactgagaaagatctgcaac
cacccttacatgttccagcacattgaggagtctttctccgagcatctcggctactctggt
ggagtcgtgagcggccctgacctgtaccgctcctctgggaagtttgagctgctggaccgc
atcctgcccaagctgagggccaccgaccacaaagtgctgctcttctgtcaaatgaccaca
ctcatgaccatcatggaggactactttgcctaccgcagcttcaagtacctgcgtctggat
ggaaccaccaaggcagaggaccgcggcatgctgctgaagacgttcaatgacccggcctcg
gagtactttgtgttcctactcagcaccagggcaggaggcctgggcctcaacctgcagtct
gctgacaccgtcatcatctatgacagcgactggaacccacatcaggacctgcaggcccag
gaccgagcccaccgcattggtcagcagaacgaggtgcgcgtgctccgcctctgcaccgtc
aacagcgtggaggagaagatcctggcggcggccaagtacaagctgaacgtggatcagaag
gtcatccaggccggcatgttcgaccagaagtcctccggctgcgagcgtcgggccttcttg
caggccatcctggagcacgaggaacaggacgaggtcggggctcaagaaggcagccgtgcc
agggggcagtgggaggaagacgaagtgcccgatgatgaaactgttaatcagatgatagcc
agaagtgaagaggagtttgagcagttcatgcgcatggatctagacagacgccgcgaggag
gcccgtaaccctaagaggaaaccccgtctgatggaggaggacgatatgcccagctggatt
ttgaaagacgatgctgaggtcgagaggctgacttgccaagaggaggaggagaagctgttt
ggcagaggatcccgccagcgcaaggaggtggactacagcgactcgctcacggagaaacaa
tggctcaaggccatagaggagggaaatctagaggacatcgaagaggaagtgcgccacaaa
aagacgaccagaaagcgcaagagggaccgcgaccacgacggcccggccacacccagctcc
agcagtggtcgcgggcgggacaaggacgaggatgtgaagaaggcgaagaagcgtgggcgc
ccgcctgccgagaagctctcccccaacccgatgtccctcacgaagaagatgaagaagatc
gtcgacgccgtcatcaaatataaggacgggactaacgggcgtcagctgagcgaagtcttc
atccagctgccgtctcgcaaggagctgcccgagtactacgagctcatccgcaaaccagtg
gacttcagaaagatcaaggagaggatccggagccacaagtaccgcggcctgaacgacctg
gagaaggatgtgatgctgctctgtcaaaatgcccagactttcaacctggaggggtctctg
atctatgaggactccattgtgctgcagtccgtcttcaccagcgtgaggcagaagattgag
aaggaggacgagagcgaaggagaggaaagtgaggaagaggaggatgacctagacgaaggc
tccgagtctgaatctcgttcagtgaaggtgaagatcaagctgagccggaaagaaaagggg
gatcgagggggaaaaggacagcggcggaggggccgtggttcccgggctaaacctgtggtg
agcgacgatgacagcgaggaggaacaggaagaggagcgctcggccagtggcagcgaggag
gactga
DBGET
integrated database retrieval system
