Cyclopterus lumpus (lumpfish): 117734725
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Entry
117734725 CDS
T09199
Symbol
ciita
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
clum01001
]
117734725 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
clum04054
]
117734725 (ciita)
Enzymes [BR:
clum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
117734725 (ciita)
Protein kinases [BR:
clum01001
]
Serine/threonine kinases: Other
TAF1 family
117734725 (ciita)
Pattern recognition receptors [BR:
clum04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117734725 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
LRR_8
AAA_16
nSTAND3
AAA_22
VapE-like_dom
Motif
Other DBs
NCBI-GeneID:
117734725
NCBI-ProteinID:
XP_034394879
Ensembl:
ENSCLMG00005005770
LinkDB
All DBs
Position
8:3735650..3750748
Genome browser
AA seq
1479 aa
AA seq
DB search
IKTTTTASTSNSIISASSRLKTSTSRLQGPVLGGSERVLPALTWTSTTEIRALLDGLLDE
RIPLSDLQPNAVSRVDQEIAELSRFAESTRKPRSDNESVDKGNLEKEKEWLEQVEEAARE
DVAALGSFVKTPGCATSESAAADTMNVAEETELACRTLDLYADHFKWAREDLAGFPLDAG
GAPEGLGSSTADGVGSTLLNWGRADARERSVQCSVTVGVAEHIFRTACGCSDEDPQEDVD
AEGRVDWGVKMQELAQDPFICPDLGDLPDDLSEYLNDDYLRKFVVPNLDTDVLFDDTWLT
CEDELSTCSALPAPDELPGPESHRPEQKDDATGDTNNGRKRPRVPRSQRCTDENTPSRSK
RQRAAGRPKTKVAQAESSVTHGADTESETSSAETAGLSTTPPRVLHLHPSIQFIPIPDSP
AYQVVRAVRLSHPIRLPFPNTAATPTFILVPAASPPFKQQEPPLSPMNGAVAPVQMSSPP
LGSLSDTASKATSPPWALPLSPNSEISTCKESPLPQSPTVLDIPHAVKDYIQEAKAHVSQ
TCQDMESGLSLTAHYVDVQVSRREILRSGKNTNKSLDKELVITGDTDRQKSLLGHVQIFE
GSNGNKPKCYILLLGNAGIGKTTMIRKLCLDWSRNCIPQFDFVFFLHGKAFSLSGAAYSL
QTLLLNLSSFAPPCMDPEAVYAQILAAPKRVLIIFDGFDELREYEILLQTQEKDLITLLQ
KDSKAQTFTVRQLYSAVLQRLLLPGCTLLLSTRPRGTASQLLRRSDSLLEVCGFTPTNVE
TYFSQYFTGPDLRVPALNCLKNCSYLQLLCWNPGLCRLVCLVLERCKSSEDLPRTLTGLC
HQVLRLKLEKDSGSTHLENESQSEVSVRSGEEPQTQISRSSHVNKRPKNAQTNSRGPVRT
RSHTQSTRGSKQQEKEEDDVDGEGMKSVDGEVDGSVRELLSQLSSLAWKGVKANSSILPT
GWTISDKLKAFGQRTGLFFSYHLRPGQVVSGDERRGGGRQDREETGTPKNGEMRGEKGGT
SPEHADASDDYILLWANPFLQSYLAAVHLSLSRSVTDRAFLQTLPFQSGQKGRRRPQREE
LELTQQFAVGLLFHDKTELQRLHSYTKASFRDMVAAKQALVTSHLESLSHGDLSPAQVLE
ACHYTYEASCMHGDGSRDSGSTRLVAHLAANLPAVLTFHGVPLEPSDVFVVQNILERGGT
EGRRFCLDLEDSGIQISGLRALVGLNNIDIYRACIADVITLWEQLEQSGEEALLRETVSK
FKIHPLKATQVCHIEHLAKLVNIHVHKRLSDSSSQSEYILAEGVPAVRELHKLELELGPE
KGPLVLPKLWELLPGLHNLQHLDLENSKIEDNGAEKLADALVPLGSLEILNLPQNCIGDQ
GVKKLATTLRDLPKLHCLSLYSNEISDEGAESLAAVLPYMASLTDLDVKYNKLTDVGAQS
LGASLRNCKKMKTLRMWNQCIPYGVLERLQQQDGRIHWQ
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
ataaaaacaacaacaacagcatcaacatcaaactcaatcatctctgcgagtagccgtcta
aagacatcaacatcccgtctgcaaggcccagtcctaggaggttctgaacgggtgttgccg
gctctgacctggacctctaccaccgagattcgggccctgctggacggtctgctggacgag
cggattcctctctcagacctacaacccaacgcggtctcgagagtagaccaggaaattgca
gaactatcgagatttgctgaatcgacgcggaagccaagaagtgataatgaaagtgtggat
aaggggaatttggagaaagagaaggagtggttagaacaggtagaggaggcagctcgggag
gatgtcgctgccctcggttccttcgtcaagactcccggctgtgcaacgagtgaaagcgca
gcggcagacacgatgaatgtggcagaggaaacggagctcgcctgcaggactttggatttg
tacgccgaccacttcaaatgggcgcgggaggatctcgcgggcttcccgctggatgcggga
ggagcgccggaaggcctcggttcctcgacggccgacggcgtggggtcgactcttttgaat
tggggtcgcgccgacgcgcgagagcgcagcgtgcagtgcagcgtgacagtgggcgtcgcg
gaacacattttcaggaccgcttgcggttgcagcgatgaagacccccaggaggacgtagat
gccgaggggagggtggattggggcgtaaagatgcaggaattggctcaggacccgttcatc
tgtcctgacttgggagatctaccagatgatttatctgaatacctgaatgatgattacctg
aggaagtttgtggtccctaacctggacacagatgtgctctttgatgacacctggttgact
tgtgaggatgaactcagcacctgcagtgctcttccagcgccggacgagctgcccggccca
gagagccaccggccggaacagaaggacgacgcaacgggagacaccaataatgggagaaaa
agacccagagttccccggtcacagcggtgcactgatgagaacacgccatcaaggtcaaag
agacagagagcagcaggtcgaccaaaaaccaaagtggcacaggccgagtcgtctgtcact
cacggcgctgacacagagtcagagacgagttcagcagagacggcgggcctctccaccact
ccaccaagagtccttcatctccatccctccattcagtttatccccatcccagattctccg
gcatatcaggttgttcgggcagtgaggctctctcatcccatcagacttccattccccaat
acagctgctacacctactttcatattagttcctgctgcttcgccacccttcaaacagcag
gagccacccctctccccgatgaacggagcagtagcgccagtccaaatgagttccccccca
ctgggatctctgtcagacaccgccagcaaagccacgtctcccccttgggctttacccctc
tcccccaacagtgagatttccacatgtaaggaatcacctcttcctcagtctcccactgtc
cttgatattccacatgctgtaaaggactacattcaggaagccaaagcacacgtgagtcaa
acctgccaggacatggagtcaggcctcagtctgactgctcattacgtagatgtgcaagtg
agccggagagagattctccgctctggaaagaacaccaacaaatccctagacaaggaactg
gtcattacgggagatacagatcggcaaaaaagcttattgggccacgtgcagatattcgaa
ggctcaaatggaaacaaacccaaatgctacatattgttactcggcaacgctggcattgga
aaaaccaccatgatcagaaaactgtgtctcgactggtccagaaactgcatcccacagttt
gactttgtcttctttttacacggcaaagcgttctctttatcgggagcagcctacagcctt
cagactctcctattaaacctctcctcttttgcccctccctgcatggacccagaggcagtc
tacgctcaaattctcgcagcccctaagcgcgtgctcatcattttcgatgggtttgacgag
ttgcgggagtatgaaattcttctccagactcaagaaaaagacttgataacgttgttgcag
aaagacagtaaagcgcagaccttcacagtaagacagttgtattctgccgtccttcagagg
ctcctccttccaggctgcactctcctgctctccactcgaccacgaggcactgccagccag
ctactcaggcggtcggacagtcttttggaggtgtgtggcttcacccccacaaatgtagag
acatatttttcccagtacttcactggtcctgacctcagagtacctgctttgaactgctta
aaaaactgcagctatctccaactcctctgttggaaccctggactatgtcgattggtctgc
ttggttttagaacggtgcaaaagttcggaggacctaccgagaactttaactgggctctgt
catcaagtgcttcgtctgaaactggaaaaggacagtgggagcacacacctggagaatgaa
agtcaatcagaagtatctgtgcgatcaggggaagaaccccagacacaaatctcaagaagt
tctcatgtgaataagcgtccgaaaaacgctcagacaaattccagaggaccggttcgcact
cgctctcacacccaaagcacaagggggtcaaaacaacaggagaaagaggaagatgacgtt
gatggggagggtatgaagagtgttgacggggaagtagatggatcagtcagagagttgctg
tcccagctgagttctttggcctggaagggggtcaaagcaaactcctccatcctccccaca
ggatggaccatatcggacaaactcaaggcgttcggccaaaggacgggactcttcttctct
taccacctgaggccggggcaggttgtctcaggtgatgagagacgaggagggggaagacag
gacagagaagaaacgggaacaccaaagaatggagaaatgagaggagagaagggtgggacg
tctcctgaacacgctgatgccagcgatgactacatcctgttgtgggccaaccctttcctt
cagagttacctggcagcggttcatctgtctctgtcgaggtccgtaacagaccgtgcgttc
ctccagaccctccctttccagtcaggccagaagggacgtcggcgacctcagagggaggag
ctcgagctcactcagcagtttgctgtcgggctcctgttccacgacaagacggagctgcag
aggcttcactcatacacaaaggcatcattcagagatatggtggccgccaagcaggcttta
gtaacaagtcaccttgagagtctctcccatggtgacctgagccccgcccaggtcctggag
gcttgccactatacgtacgaggcgagttgcatgcatggcgacggcagcagagacagtggt
agcacgcgattggtcgctcacctggcagcgaatcttccagcagtcctgacatttcacgga
gttccactcgagccgtcggacgtgtttgttgtgcagaacattctcgaaaggggtggaact
gaaggaagaagattctgtttggatctggaggattctgggatacagatttcggggctcaga
gctctggtggggctcaacaacatcgacatatatagggcatgcattgctgacgtcatcacc
ttatgggagcagctggagcagagtggcgaagaagccctcctacgagagacggtctccaaa
ttcaagatccatcctctgaaagccacacaggtgtgtcacattgagcacctggcgaagctg
gtgaacatacatgtgcacaagaggctgtcggacagttccagccaatcagagtacatcctg
gcagagggagtaccagctgtcagagagctacacaaactggagttagagcttggtccagaa
aaaggtcccctggttcttcccaagctttgggagctcctgccaggtctacataaccttcag
cacttagatctagagaacagtaagatagaggacaacggagctgagaaattggctgatgct
ttagttccacttggttccctggagatactcaatctcccacagaactgtatcggagaccag
ggggttaaaaaactagcaaccacgctgagggatctgcccaaactgcactgtttaagtctc
tacagtaatgagatttctgatgaaggtgcagagagcttagcagctgtcctcccatacatg
gcttcgctcactgacctggacgtgaaatataacaagctgacagacgttggagcgcagagc
cttggagccagtctgaggaactgtaaaaagatgaagactctgaggatgtggaaccagtgt
attccatacggagtgcttgagcgacttcagcagcaggacggccggatccactggcagtag
DBGET
integrated database retrieval system
