Cyclopterus lumpus (lumpfish): 117734738
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Entry
117734738 CDS
T09199
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117734738
03036 Chromosome and associated proteins [BR:
clum03036
]
117734738
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117734738
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117734738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
Mei5_like
THOC7
Motif
Other DBs
NCBI-GeneID:
117734738
NCBI-ProteinID:
XP_034394930
LinkDB
All DBs
Position
1:6405441..6449235
Genome browser
AA seq
1959 aa
AA seq
DB search
MEEKKKKKQEEKTKSDVAQKTAADQKPKVPEPAPTKPSPGPPHHLHHASPTLPLSSNGKR
ASSSSQLPTQTPPQQQCQLSSASARYPPREVPPRFRQQEHKQLLKRGQPLPAGALSTLTL
SCSSSSSSSSPSASYSSSTTASTYPNSSTSTAGKRHPDIALQSGSVAQYETSHWGDSLPV
DSACSANRWDKVIIDRSDKEVWPSISRISDPGHPAAPECSLGSASSTTDTSAVTTTSSNS
FLSMATGAAGQQAHYSSLKANNNMMTGPGSANTCSSRGWGSDGKQDGMNGGRVGAPNNWG
STNFNLNLNPNANPSAWPVLGQEGGGGCGIGPNVVSNSPSLPPGINGNMGNGSLGGADNG
GGGWGGMMSANENDQQHPSTNTSLSFKMEPSNLNNDGPNHTKQQQQAQEPMSPIHGITGW
GGQSPTESSQLNGDTTGSSVWGSGETKAADSPKDPGWDSTPSGGLSGWGRQGSGGGSSGS
GGWCDWGKTSGGGEASKGWDSVDAGSSGSGQEQQHSSWGQQPRTAPASDGSGASSESQSG
RDRSSSTDCTPLLPRQDLDPRVLSNTGWGQTPIRQHTVWEMEEANSDEGKIKSSSASTGC
SSSNVRPSSINGSTINPKMGPSQRPVSGEKSDNEGSSSSSGWRAPPPQPIQTGSGWGDPP
QSHSKAQNGNTSGWGDTLPPNAPRNKGTPSWGSEEKSSSWDDGMTKSQPTNWGEGPKSSH
GWGNSNGGSNGTSTGEWGEAEVKKNGSSSSMWEGEGGNGGNGGNGGNGGWKESPRGGNRG
GGGGGGWNKPAHAPAPAPTPAPAPAPAPAPAPAPVVSNSSWGEIPRANGPVQGNWGSSKA
QESSSSSSNGSGGGGSMGSWGGPGTVKQNSSSWGNGSKQDQGMDPTGWEEPSPPSIRRKM
EIDDGTSTWGNPGTNSKTVNMWDRKNPNNNPGNSGPPPSKGGGVVVPNNNNNNHSVGPGN
NNPHHTHHMHHHPHHGQPPPHLQHHGNNNGSSNHGPQHPSVGLQGRPPLTNPGWGEVPNV
QPKSEPAWGEPAAPTSSVDNGTSAWGKSGGGGGGWGDGGHESSGPYGRANGPTGSSACKP
GPKPMQDGWGNGGEEMGMSSGQWDAEDGDMWNSPTSQESSSSCNSWGNGPKKGPSKCKMG
KPDEAWIMNRLIKQLTDMGFPRDPAEEALKSNNMNLDQAMSALLEKKTDLDKRGMGMSDY
SNGMNKPMVCRPSALSKDPSDRTSFLDKDGVLSDDAPPSPFLPSPSLKLPLANSSLPGQG
LGQGNPGLAMQNLNNRQMPSGMFGSSGAAQTRAMLQQHHQQQQQPPVPPLSSSQPSLRAQ
VPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQQMTLLYQLQQLQMAYQRLQIQQQMM
QAQRNVSGPIRQQEQQVARTITNMQQQIQQHQRQLYQALLMKQQQLPPHSSSSSSAGMHN
PGGPSGGHGSGKSTHDPYAGAHQAPGLADTLHTKEPPSSPNAYSTYPLSGLNPNMNVNCM
EVGGMSLKEPPQPQSRLSQWTHSHSMDGISGNSSNMENNLNKHGAISAASTLGPPGKPHH
LEDSYSPYNLMSRSESPTSPMVPHDSWGQSQGQGKSPNEKISNGTNINWPPEFCPGVPWK
GLQNIDPENDPNMTPGSVPSGPTINTNIHDVNRYLLRDRNGATSPALPALPPTSNDWPVC
GYSSSFQSLSSPDGEGSGKLSDMKSTWSPGPISQGQSSLSHELWKVPQGPRSNAAPSRPP
PGLTNNKPSSTWGGNSLGLAQGWSASYTAEGTTWSTDSPSRTSSWLVLRNLTPQIDGSTL
RTLCMQHGPLITFHLNLTQGNAVVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVN
RFFAQGQSQSQSLGANTTSWQANPVANQNRMGGAAQSHPMNQWSSGGGCGGKSSDLLWGG
MPHYSSLWGPPGGDDARVIGSPTSINTLLPGDLLSGESM
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaaacaagaagaaaagaccaagtcggacgtcgctcagaaa
acggctgctgatcagaaacccaaagtgccagagcctgctcccactaagcccagtcccggc
ccaccccaccacctccaccacgccagccctacgctgcccctctcctccaatggcaagcgc
gcctcctccagtagccaactcccgacccagactccccctcagcagcagtgccagttgtcc
tctgccagtgctcgctacccgcccagagaggtgcccccacgcttccgccagcaggagcac
aagcagctactgaagagaggccagccactgcctgcaggagccctcagcacgctcaccctc
tcctgttcctcttcctcctcctcctcttcgccctcggcgtcgtactcctcttctacgact
gccagcacttacccaaactcttccacttccactgcgggcaaacgccacccagacatagcc
ctccagagtggctctgttgcccagtatgagacctctcattggggagactctttgccagtt
gacagcgcctgcagtgccaaccgctgggacaaagtgattattgaccgaagtgacaaagaa
gtttggccctccatcagccgcattagtgaccccggccaccccgcagccccagaatgctct
ttgggctcagctagctctaccacagacacgagtgctgtcactaccaccagtagtaatagt
tttctgagtatggccacaggtgccgcaggccagcaggcccactactcctctcttaaagct
aacaataacatgatgacgggacctgggtcagccaacacatgcagtagtagaggctggggc
tcagatgggaaacaagatggtatgaatggtggtcgagtaggggcacccaataactggggc
tctaccaattttaacttgaacctcaatcccaatgccaacccatcagcttggcctgttctg
ggccaggagggtggtggaggttgtggtattggccccaatgtggtatcaaactccccatcc
ctcccaccaggtattaatggaaacatgggaaatggaagcctgggcggtgcggataatggc
gggggaggttggggtggcatgatgagtgctaatgaaaatgatcaacagcacccttcaact
aacacaagcttgtccttcaaaatggaaccttctaaccttaacaatgatggaccaaaccac
actaagcagcagcagcaagctcaggagcctatgagccctatccatgggataactggctgg
ggaggccagtcacccactgaatcatcccagctgaatggagacacaacaggcagctctgta
tggggtagtggagaaaccaaggctgctgactctcccaaggacccaggctgggactcaact
ccctctggaggcctttctggttggggccggcaaggcagtggtggtgggagtagtggaagt
ggtggctggtgtgactgggggaaaacctctggcggcggagaggcatctaaaggctgggac
tcagtagatgctggaagctctggttcaggccaagagcagcaacatagctcatgggggcag
cagcccagaacagccccagcgagcgacggtagtggggccagcagtgaaagtcaatctggc
cgagacaggtcctccagcacggattgtacccctcttctaccccggcaggacctggaccct
agggtgctgagtaacacgggttggggacagaccccgatccgacagcacactgtatgggag
atggaagaagccaactcggatgaaggaaagatcaaaagtagctcagcctccacaggatgc
tccagctctaatgttagaccctcatccatcaatggaagtaccatcaacccaaaaatgggc
cctagtcagaggcctgtgtctggagaaaaaagtgacaatgaaggatcatcatcatcctct
ggctggagagcccctccacctcagcctatccaaactggatcaggatggggggaccctcca
cagtcacatagcaaagcgcagaatggcaataccagtggctggggggacactttgcctccc
aatgctcccagaaataaaggcacaccctcctggggttctgaggaaaagtcttccagttgg
gacgatggcatgacgaaaagtcagccgactaactggggagagggccccaaaagctcccat
ggatggggcaacagtaatggcggctccaacggcacaagcacaggggagtggggagaggcg
gaggtcaagaagaatggatcatccagtagcatgtgggaaggtgaaggaggtaatggaggc
aatggaggtaatggaggaaatggtggctggaaggagagccccaggggaggaaatagagga
ggagggggaggaggaggctggaataagcctgctcatgctcctgctcctgctcctactcct
gctcctgctcctgcacctgcacctgctcccgctcctgctcctgttgtgagtaatagcagc
tggggggagatcccacgtgccaatggcccagtgcaggggaactggggctcttctaaggcc
caggaaagcagcagcagcagcagcaatggcagcggaggaggtggcagcatgggttcatgg
ggtggtcctggtactgtgaagcagaactcatcgagctggggaaatggcagcaaacaggac
caaggcatggatcccactggctgggaagagccctcccctccctctatccgcaggaagatg
gagattgacgatggaacgtccacctggggcaatcctggcaccaacagcaagactgtcaac
atgtgggatcgcaaaaatcctaataataacccaggcaacagtggcccaccgcccagtaag
ggtggtggagtggtcgtccccaacaataacaacaacaatcactctgtcggccctggcaac
aacaatccccatcacacccaccacatgcaccaccacccccatcatggccagcccccacct
cacctgcaacaccatggaaacaacaatgggtcatccaaccatggcccccaacatccaagt
gttggactccagggtagaccccccctcaccaacccaggttggggagaagttcccaatgtt
cagcccaagtcagagcctgcttggggagagccagctgctccaacatcatctgtggacaat
ggcacctctgcctggggaaagtcaggaggaggaggaggaggatggggagacggtggccac
gagtcctctggtccctatggcagggccaacggacccacaggttcttcagcctgcaagcca
ggtcccaaacctatgcaagatggctggggaaatggaggggaggagatgggcatgtctagc
ggccaatgggatgctgaggatggggacatgtggaacagccccacctcccaggagagcagc
tcttcttgcaactcctggggcaatggacccaagaagggcccgagcaagtgcaagatgggc
aagccagatgaagcttggatcatgaaccgtctcatcaaacagctcactgacatgggcttt
ccaagagaccctgctgaggaggctttgaagagcaacaacatgaaccttgaccaggccatg
agcgccctgttggagaagaagacggacctggacaagcggggcatgggcatgtctgactac
agcaacggcatgaacaagcccatggtgtgtcggccctctgctctctccaaagacccctca
gaccgcacatcctttcttgacaaggacggtgttctgtcagatgatgcccccccatcaccg
tttctgccttcccccagcctgaagctccccctggccaacagtagccttcctgggcagggt
ctgggacagggcaacccggggctggccatgcaaaacttgaacaacagacagatgcccagt
ggaatgtttggcagtagtggagcagcacaaacccgggcgatgctgcagcagcatcatcag
cagcagcagcagccaccagtgccacctctcagctcctcccagcctagtctacgtgctcaa
gtgcctcagtttctctcccctcaggtccaagcacagctcttgcagtttgcagcaaaaaac
attggcctgaaccctgcacttttaacctcaccaataaaccctcaacagatgaccctcttg
taccaacttcagcaactgcaaatggcgtaccagcgtttacaaatccagcagcagatgatg
caggcgcaacgcaatgtttccggccccattagacaacaagagcagcaagttgcgcgtaca
atcaccaacatgcagcagcagatccagcagcaccagcgtcagctgtaccaagcgctgctg
atgaagcagcagcaacttccccctcactcctcctcctcctcctccgccggtatgcataac
cccggcggtccctccggaggccacggttccggcaaatcaacccacgacccctacgcaggc
gcacaccaggctccgggcctagccgacacactgcacaccaaagagccgccgtcttcgccc
aacgcctacagcacctaccctctctctggactaaatccaaacatgaatgtaaactgcatg
gaggttgggggtatgtccctgaaggagccccctcagccccaatcccgcctgtcccagtgg
acacactctcactccatggacggcatctctggcaactcctctaacatggagaacaacctc
aataagcacggtgccatatctgctgcctctaccctgggtccccccgggaagccccaccat
ctggaggactcgtacagcccttacaatctaatgtcccgctctgagtcccccaccagccca
atggtgccccacgacagctggggccagagccagggccagggcaagagccccaatgaaaag
atctccaatgggaccaacattaactggcccccagagttctgcccaggtgtgccatggaag
ggccttcagaacatcgaccccgagaatgaccccaacatgacccctggcagcgtccccagc
ggccccaccatcaacaccaacatccacgacgtcaaccgatacctgctgcgggacaggaat
ggagccacttccccagctctgccagctctgcctccgaccagcaacgactggccagtctgt
ggctactcgagctcttttcagtctctttcgtcccctgacggagaaggctcaggcaagctg
tctgacatgaagtccacctggtccccggggcccatctcccagggccaatcctctttgtcc
cacgagctgtggaaagtccctcaggggccgcgcagcaacgctgccccttctcggccccca
ccaggcctcaccaacaacaaaccctcctccacctggggcggcaactcgctgggcctggcc
caaggctggagcgcctcctacaccgctgagggaaccacctggagtactgacagccccagc
aggaccagcagctggctggtgctgaggaatctcaccccacaaattgatggttcgactctg
cggacgctgtgcatgcagcacggccccctgatcacattccacctcaacctgacccagggg
aacgccgtggtgcgctacagctccaaggatgaggccgcaaaggcccagaagtctctgcac
atgtgtgtgcttgggaacaccaccatcctggcggagtttgccggcgaggaggaggtgaac
cgcttctttgcacaaggccagtcccagtcccagtccctgggggctaacaccactagctgg
caggctaacccagtagccaatcaaaaccggatgggcggggcagcacagtcccaccctatg
aaccagtggagcagcggcggtggctgcggaggcaagtccagcgacctgctgtggggcggt
atgccacattactccagcctgtgggggccgccgggcggagacgacgcccgtgtgattggg
agccccacctccattaacaccctgctgcctggagatctgctgagtggagagtccatgtag
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integrated database retrieval system
