Cyclopterus lumpus (lumpfish): 117734782
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Entry
117734782 CDS
T09199
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117734782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117734782
03021 Transcription machinery [BR:
clum03021
]
117734782
03036 Chromosome and associated proteins [BR:
clum03036
]
117734782
Transcription factors [BR:
clum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TOX
117734782
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117734782
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117734782
PBAF complex
117734782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
GCN5L1
Motif
Other DBs
NCBI-GeneID:
117734782
NCBI-ProteinID:
XP_034394939
Ensembl:
ENSCLMG00005015178
LinkDB
All DBs
Position
8:complement(10092422..10105389)
Genome browser
AA seq
478 aa
AA seq
DB search
MSKRPSYAPPPPPAPAAQLPSTPGFVGYNPYSHLAYNNLRLGGSSGGSSRNSSGITVPKP
PKPPDKPLMPYMRYSRKVSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQDYLNE
YEAEKIEYNDSLKAYHNSPAYLAYVNAKNRAEAAMEEESRQRQSRMDKGEPYMSIQPAED
PDDYDDGFSVKHTAAARFQRNHRLISDILSEIVVPDVRSVVTTARMQVLKRQVQSLMVHQ
RKLEAELLQIEDRHQDKKRRFLETTDSFNTELKRLCSQKVEVDMEKLAAEMAAAEEAARR
RAEEREREAAEQAEKAAQQQQEAAGNKAAEQGGANASSTANPTLGTKEEDKPTPMETDEV
APAEASSDPQPAPPPPSDPAPSASDKATPPPEPPRESSTPGSSTPSDDGRNSMPPPSSDS
NAGAATPDTPATQEANSSAATPNVAAAPPPPPPSEDPAPPPPPPPLLPPSQSSQQYDA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacgaccatcctacgcccctccccctccccctgccccggcagcacaattgcct
tccacccctgggtttgtgggctacaacccttacagccatctggcctacaacaacctccgg
ctgggagggagctccggaggctccagcaggaactcctcagggatcaccgtcccaaaacct
cccaaacctccagacaagccactgatgccttacatgcggtacagccggaaggtaagcagg
aaggtgtgggaccaagtgaaggcgtccaacccggacctgaagctgtgggagatcggaaag
attatcggagggatgtggagagacctgaccgatgaggagaaacaagattacctcaacgag
tacgaagctgagaagattgagtataacgactcgttgaaggcctaccacaactcaccggcc
tacctggcttatgtcaacgctaagaaccgggccgaggccgccatggaggaggagagcaga
cagaggcagagtcgcatggacaaaggagagccgtacatgagcattcagcctgctgaagac
cctgatgactacgatgatggcttttcagtaaagcacacagcagccgctcgcttccagagg
aaccaccggctcatcagtgacatcctcagtgagatcgtggtgcctgatgtccgctcggtg
gtcaccacagcccgcatgcaggtcctcaagaggcaggtccagtctctcatggtgcaccag
aggaagctggaagctgaacttctacagattgaggatcgccaccaggacaagaaaaggcgc
tttctagagaccactgactcattcaacactgaactcaagcggctttgcagtcaaaaggtt
gaggtggacatggagaagctagcagcagagatggctgctgctgaagaggcagcgaggcgc
cgggcggaggagagggagcgagaggcggccgagcaagcagagaaagctgctcagcagcag
caggaggcagctggaaacaaagcggcagagcagggcggtgctaatgctagcagcacagct
aaccccaccctagggaccaaggaggaggacaagcccacaccaatggagacagatgaggtg
gcgcctgcagaggcctcgtcagatcctcagcctgctccacctcctccatctgaccccgcc
ccttctgcctctgataaagcaacccctccccctgagccgcctcgggagagcagcactcct
ggcagcagcacccccagtgatgacggcaggaacagcatgccccctccctcctcagacagc
aacgctggagcagcgacacctgacaccccagcgactcaggaagccaactccagtgcagct
acccctaatgtggctgcagcacctccgcctccccctccctcagaagatccagccccccca
ccaccaccaccaccactactaccccccagccagagcagccaacagtatgatgcataa
DBGET
integrated database retrieval system
