Cyclopterus lumpus (lumpfish): 117734827
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Entry
117734827 CDS
T09199
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04120
Ubiquitin mediated proteolysis
clum04137
Mitophagy - animal
clum04144
Endocytosis
clum04340
Hedgehog signaling pathway
clum04350
TGF-beta signaling pathway
clum04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117734827 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
117734827 (smurf1)
04350 TGF-beta signaling pathway
117734827 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117734827 (smurf1)
04137 Mitophagy - animal
117734827 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
117734827 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117734827 (smurf1)
04121 Ubiquitin system [BR:
clum04121
]
117734827 (smurf1)
03029 Mitochondrial biogenesis [BR:
clum03029
]
117734827 (smurf1)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117734827 (smurf1)
Membrane trafficking [BR:
clum04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
117734827 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
117734827 (smurf1)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
HECT type E3
117734827 (smurf1)
Mitochondrial biogenesis [BR:
clum03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
117734827 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
117734827
NCBI-ProteinID:
XP_034394992
Ensembl:
ENSCLMG00005010392
LinkDB
All DBs
Position
8:complement(14847169..14860606)
Genome browser
AA seq
728 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISIWNHKKIHKRQGAGFLGCIRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENDGPVFEGCFSEEPLPYSDPTGA
AGGGNCRLDSPSQEGRLQTQRIRGQDSRGHGHTPQNRPHGHQPPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLASVSCEELGPLPVGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISQQSQAKESSQAPLMDVGGEEGVGGGVGGGDGDVAARYERDLVHKLKLLRHEL
SLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWLY
LLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRVMGLAVFHGHYINGS
FTLPFYKQLLGKPIQLNDLETTDPELHKSLVWILENDITSVLDHTFCVEHNAFGKFSQHE
LKPNGRNIPVTEDNKKEYVRLYVNWRFMRGIEAQFLALQKGFSELIPQHLLKPFDHKELE
LIIGGLGKIDLADWKTNTRLKHCTSESNVVRWFWQAVEAFSEERRGRLLQFVTGSTRVPL
QGFKALQGSTGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVE
ETCGFAVE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctgggactcggaggaacgggtccagcatcaaaatccgactgacagtatta
tgtgccaagaacctcgcaaagaaagacttttttcgcctgccagatccatttgccaaggtt
gtggtggacggatcaggtcaatgccactcgacagacacagtcaagagcacactggacccc
aaatggaatcagcactacgacctctacattggaaagacagactccatcaccatcagtata
tggaaccacaagaagatccataaacgacaaggagcgggcttcctgggctgcatacgactg
ctctccaacgccatcagcaggctaaaagacacaggataccagcgtctagatctatgtaag
ctgaacccctcggacagtgacgcagtgcgggggcagatcgtagtgagcttacagacgcga
gatcgcatcggcagcggaggtcctgtggtggactgtagaggactgttggagaacgatggg
cctgtgtttgagggatgcttcagtgaagagcccctgccctactcggaccccactggtgcg
gcggggggcgggaactgtcgacttgactcacccagtcaggagggccgtcttcagacgcag
cgaatcagagggcaggattcaagaggacatggccacacccctcagaacagacctcatggg
caccaaccgcctgacctgccagagggatatgagcaacggacaacagtgcagggccaggtg
tacttccttcacacacagacgggcgtcagcacctggcacgaccctcggataccgcgggac
ctggccagtgtgagttgcgaggagcttgggccgctgccagtgggctgggaggtccgaagc
acggtgtcgggccggatctactttgtggaccacaacaaccgaaccactcagttcacagac
ccgcgcctacacaccattatcagccagcagtcccaagcaaaggaatcttcacaagccccc
ctgatggatgtggggggtgaggaaggagtgggtggaggagtcggcggaggagatggagat
gtggcggcgcgctacgagagagacttggtccataaattaaagctgctccgccatgagctg
tccttgcagcagcctcaagccggacactgtcgcatagaggtgtcccgagaggagatcttt
gaggagtcatatcggcaaataatgaagatgaggcccaaagacctaaagaagcgtctgatg
gtgaagttcaggggagaggagggcctggactatgggggcgtggccagggagtggctgtac
ctgctgtgtcatgaaatgttgaacccctattacggcctgttccagtactccacagacaat
atctacacactacagatcaaccccgactcctccatcaaccctgaccacctgtcatatttc
cactttgtgggccgtgtgatgggcctggcagtttttcatggtcactacatcaacgggagc
ttcacgctgcccttctacaaacagctgctaggcaaacccatccagctcaacgacctggag
accactgacccggagttgcacaagagcctcgtctggatattagagaacgacatcacttca
gttctcgaccacacgttctgcgtggagcacaatgcctttgggaagttctcacaacacgaa
ctcaaacctaacggccgcaatatccccgtcaccgaggacaacaaaaaagaatatgtcagg
ctttatgtgaactggaggtttatgcggggaattgaagcccagtttctggctctgcagaag
ggattcagtgagctcatcccccagcacctcctcaaacctttcgaccataaagaacttgag
ttgatcatcggcggactggggaagatagatcttgcagactggaagacgaacacgcgcctg
aagcactgcacaagtgaaagcaacgtggtgcggtggttctggcaggcggtggaggccttc
agcgaggagaggagaggacgcctcctgcagttcgtcactggctccaccagggtgccctta
caagggttcaaagcgcttcagggttctacaggttctgcaggaccaaggctcttcaccatc
catttgatagacgccaacacggacaacctgcccaaggctcatacatgttttaaccgaata
gacatccctccctacgagtcttacgagaaactctacgagaaactgctgacggccgtggag
gagacctgcggcttcgctgtggagtga
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integrated database retrieval system
