Cyclopterus lumpus (lumpfish): 117734836
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Entry
117734836 CDS
T09199
Name
(RefSeq) ATP-dependent RNA helicase DDX39A-like
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117734836
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117734836
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117734836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117734836
NCBI-ProteinID:
XP_034395020
Ensembl:
ENSCLMG00005007794
LinkDB
All DBs
Position
1:complement(7131807..7136628)
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AA seq
427 aa
AA seq
DB search
MAETDVDNELLDYEEDEEPQGAPETGTPANKKEVKGSYVSIHSSGFRDFLLKPELLRSIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKVSVFFGGLAIKKDEEVLKKNCPHIVVGTPGRTLALIR
NKTLNVKNIKHFVLDECDRMLEQLDMRHDVQEIFRVTPHEKQVMMFSATLSKDIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVHRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaccgatgttgataatgaacttttggactatgaggaggacgaggagccccag
ggagcccctgagactgggaccccagcaaacaagaaggaagtgaaggggtcctacgtttcc
attcacagctcgggcttcagagactttctcctcaaaccagagctgctccggtccattgtc
gactgtgggtttgagcatccctcagaagtccaacatgagtgtattccacaagctatcctg
ggcatggacatcctgtgtcaggccaagtctggtatgggaaagactgccgtgtttgtactg
gccaccttgcaacaaatagaacctgtggatggtcaggtgtctgtccttgtaatgtgccac
acacgagagttggccttccagatcagcaaagagtacgagcgcttctccaagtacatgccc
actgtcaaggtgtcggtgttcttcggcggcctggccatcaagaaggacgaggaagtgctg
aagaagaactgccctcacattgtcgtaggaactccaggacgtaccctggccctcatccgc
aacaagaccctcaatgtgaagaacatcaaacactttgtgcttgacgagtgcgataggatg
ctggagcagctggacatgaggcacgacgtccaggagatcttcagggtgacacctcatgag
aaacaggttatgatgttcagtgcaacgctaagcaaagacatccgccccgtctgtcgcaag
ttcatgcaggatcccatggaagtgttcgtggatgacgagaccaagctgacactccacggc
ttacagcagtattactgcaagttgaaggacagcgagaagaaccgaaagcttttcgacctg
cttgatgtactcgagttcaaccaggtggtgatctttgttaagtcagtgcatcgctgtgtt
gctctgtcccagctgctggtggagcagaatttccccgccatcgccatccacaggggcatg
gcgcaggaggagcggttatcccggtaccagcagtttaaagacttccagcggcgaatcctg
gttgcaaccaacctgtttggtcggggcatggacattgagcgagtcaacattgtcttcaac
tacgacatgccagaggattctgacacgtaccttcacagagtggcccgtgctggcaggttt
ggtaccaaaggcctggccgtcacctttgtgtctgacgagaccgacgccaagaccctgaac
gacgtccaagaccgctttgaggtcaacgtagcagagctgccagaggagatcgatatctcc
tcctacattgaacagtccagatga
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