Cyclopterus lumpus (lumpfish): 117734901
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Entry
117734901 CDS
T09199
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117734901 (ddx39ab)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117734901 (ddx39ab)
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117734901 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117734901
NCBI-ProteinID:
XP_034395119
Ensembl:
ENSCLMG00005020602
LinkDB
All DBs
Position
8:complement(12470709..12475280)
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AA seq
427 aa
AA seq
DB search
MAENDVDNELLDYEEDEEPQGAPETVAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAII
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMSSVKAAVFFGGMAIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLALKNVKHFVLDECDKMLEQLDMRRDVQDIFKITPHEKQVMMFSATLSKEVRPVCRR
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVAELPDEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgatgtcgacaacgagctgctcgactacgaagaggatgaggagccccaa
ggagccccagagactgtggcccctgcaggaaagaaggaggtgaagggctcctacgtctcc
atccacagctctggcttcagagactttctgctcaaaccagagctcctgcgcgccatcatc
gactgtggttttgagcatccgtctgaagttcaacatgaatgcatcccacaagctatcctg
ggcatggacatcctgtgccaagctaagtctggtatgggcaagacggcagtgtttgtgctg
gccacactgcaacagattgaacctgttgatggacaggtgtctgtattagtcatgtgtcac
acgcgagagctggccttccaaatcagcaaagagtacgagcgcttctccaagtacatgtcc
tctgtaaaggcggccgtgttctttggcggcatggccataaagaaggacgaggatgtcttg
aagaagaactgccctcacatcgtggttggaacgccaggccgcatcctcgctctcatccgc
aacaagaccctcgccctgaagaacgtcaagcactttgtcttggatgaatgtgacaaaatg
ttggagcagctcgacatgaggcgtgacgtacaggacatcttcaagattacaccccatgag
aagcaggtcatgatgttcagtgccactctgagcaaggaggttcgaccagtctgccgcaga
ttcatgcaggatcccatggaagtatttgtggacgacgagacaaaactgacactccacggc
ctgcaacaatactactgcaagctgaaggacagcgagaagaaccgcaagctctttgacctg
cttgacgtgttggagttcaaccaggtggtgatctttgtcaagtcagtccagcgctgtgtc
gctctggcccagcttctggtggaacagaatttccctgccatcgccatccacagagggatg
gctcaggaggagaggctgtctcgctatcagcagtttaaggacttccaaaggcggatcctg
gtggccaccaacctctttggccgaggaatggacatcgagcgggtcaacatagtcttcaac
tacgacatgccagaagattctgacacctatttgcacagggttgcccgtgccggtcggttt
ggcacaaaaggcctggctataacctttgtgtcggacgagaccgatgccaagactctgaac
gacgtgcaggaccgcttcgaggtcaacgtggccgagttgccggacgagattgacatctcc
tcttacatcgagcagtccagatga
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