Cyclopterus lumpus (lumpfish): 117734972
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Entry
117734972 CDS
T09199
Symbol
shank1
Name
(RefSeq) LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
clum
Cyclopterus lumpus (lumpfish)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
SAM_1
Ank
Ank_4
SH3_2
SAM_2
Ank_3
Ank_5
PDZ_6
PDZ
SH3_9
FERM_f0
SH3_1
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
117734972
NCBI-ProteinID:
XP_034395236
LinkDB
All DBs
Position
8:6149431..6193861
Genome browser
AA seq
2453 aa
AA seq
DB search
MTMPFSPLSSDEEQQRMLGNNRHLYPGAEDEEEEEEEEEGIEEDERDEDQEEEENGELEG
EEEDNEEEMVEEVRRGGLSRVGRGEGHRQPGKLSGRPAGDRQIRSGNPGHATNPYASNPG
PTHQQPANHVQQPQQQQPRRLKERSTGTVSSEDTHIAMMVFRIGIPDIKQTKCLRFNPDA
TVWKAKQQVLCSLTESLRDVLNYGLFQPATDGHDAMFLEEERLLREYPQSFEKGVPYLEF
RYKTRVYKQTNLDEKQLAKLHTKASLKKFMDYIQTSAVDKMVKFLDKGLDPNYQDADTGE
TALSLAVQCEPGGGEAIRVLVEGGAHIDFRAKDGLTPVHKAVRGHRHTALLVLLSLGASP
DYKDRRGLTPLYHTVLTGGDTSCCETLLYHHAKLGIRDENGWDETHQACQHGNSQHLEHL
LFYGADSSSQNASGNTALHICALYNKESCSRILLYRGANKDTKNNNGQTPFQVAVMSGHF
ELGEIIKNHRDTDVVPFVESPKYAPQRRESTRTLTIPHPHPFLRANSDSSMNLPEWMAVP
NAPGTNIVSVQGYKHTGTLRSSSSPRGARTRSPSRGRIGDKEDRSRQSRRQGPAPASTAG
PTAGQRRRLYSAVPGRVFVATRSHSAQGEREISFSKGDRVKVLSVGEGGYWEGTVRGRTG
WFPSDCVEEVMLRSQDNRSESRGERAKRLFRHYTVGSYDSFDAPSDYIIKEKSVLLQKKD
SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNV
VKVGHRQVVNMIRQGGNSLMVKVVMVTRNPDMEEGSRKKIPQQSKRLSTPAIALRSKSMT
SELEEMVERAATPWKKKSEFEILTSYRRRRGLSYQMALNKLDEILAAAQQTISTNEAPGT
RGQGAKRDRGRSFYGNETNYGDQSWMGMMSSGLGLGYDRGXYASGHGPQHGMRRQKSAGA
PDEERQFLNPPAXEFARSLSVLAQTKDPSPPTTAPPEXPFSSAPPLGXRAKSSQQSVSVS
QSTSTSAHYSXYSQSAHFTHGGRETAGSSTGPSGGGGDHTTSYAHAVGHTAQSRTASRKV
AYSGEPVGAGTGAGGGAKTAGLERSYTTAIPPSSIATVMRSTKQTTQIQPQRTDRSAAGA
GAGGXQGGTRRGKGPLMKHPRXRTYAXARVPWGAKGSVIKVSITIPTIIVKAPSNQQQXR
SSQGSSVEADPPASGETDEAKNTTCPPPSNPATQPPSPPSIPAPPPPSLPSMRAQDNLDF
TSQFGAAIVGAARRDRERLHEARRKSASLFMSAEEDVSIGSDGITRTQVSQQQLSTQEGS
STRLRPSKSIDEGMFSGDNFIHHTRSMPPAFGLPEYSSAALDYQPKSVPTDLYTSAGRQA
APSSTTTFIHPLTGKALDPTSPLGLALAARERALRDDSRLRRGADHHFTRQMSSVVFPSS
TVTSPPVSSTAQSSSSSYLVTSSSLAGTTATAGRPPSPRILRGVGSVWSEEGSGGERERE
GGGAREGLRVRFSEDKTVHTHHYQPQPYQPTYKERERERSRERERSRERERELSRERERD
KEREGYMRRAEQAAANAAADSSAQQGSHPQQPGRPAFLRMESQADAYILSLTPPSPPPTS
TQQTANTTGSTGLMVLPPPAPSIDADDEFVFADPLPPPLQFANSFDRGIGGLSGYSQHGM
RPNSLSRQQQVPAPPPPPPPPPPPPPPIKEPFISGFPAHTPLPSPQAGDSTASSLTSYDS
EVANLTQSAPSPSQTSPNPPPPHSPSTLQPTSMTGPPPLPSVSPPPPPGSYHRPFSMSHP
HHLYNSSHTPGRSSPTPPPHTVTPPHGYRGPPAPSPTAATAAQLRGTFSHATTSSCATTT
AAATTTTSTSTQLYHERTHTTHTTSSTTITGGRRTGEYHRPHPATKKGESQETVVDSGIE
ELDSRSSSDHHLDSILAGVRENRLDRGERGRIGGGGGGTGESERGADFMESYMSYLDGQT
FEMQNATAAASTYPKSNRFREGGRTSDLHRQTSTAPASFHSHRRREEQEEDEEGADESSR
DGYGMRDMQNLGRPISPYFDRPRTPEMKPLWGEGQMSGDQSAALLEGKKIYPPASSMKPN
IINELSSKLQQRTKESWSSQRPLGRHRHRFSEDSASALSPPSARSQSPSPISLSQPSLSP
SPTPASQYPNWGRSPSPQPQAISQPPRSHSPISPTSYSPYPTSPKHRPVYRTKALEFQFI
PSRETRKAESHFQRRRAPSPLISPAERPKPGPPRPSSLPLLPTTPLYSAMYDLRGSITPP
SPGNPLGDPYFSPSPPLFAPSGAPPPPNSALVVSRSLSPTHFLSGTSSPPLHPLPPPTCL
SYPHLPPPSPTKPFASKPLPYWTKYDVADWLGYLNLGEHREHFLDNEIDGTHLPSLTKDD
YLDLGVTRVGHRMNIERALRTIMDRLSSSPFPILVLSPRDGQTERRRDDGSRS
NT seq
7362 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgccgttcagccccctgtccagcgacgaggagcaacaaaggatgctgggaaat
aatcgacatctctatccaggggcagaggacgaggaggaggaggaagaggaggaggaggga
attgaagaggatgaacgtgatgaggaccaggaggaggaggagaacggcgagctggaaggg
gaggaggaagacaatgaggaggagatggtggaggaggtcaggcgaggtggcctgtcgcgg
gtgggcagaggtgagggacacaggcagccaggtaaactgtccggaagacccgccggggac
agacagattcggtcagggaacccgggacatgccacaaacccctatgcgtctaatcccgga
cccacgcaccaacagccagccaatcacgtacagcagccgcagcagcagcagccgaggagg
ctgaaggagcgcagcaccggcacggtgtcatctgaggacacccacattgctatgatggtg
tttcgcatcggcatcccagacataaagcaaacgaaatgtttgcggttcaacccagatgcc
acagtgtggaaggccaagcagcaggtactgtgctccctcaccgaatctctgcgggacgtc
ctgaactatggtctgttccagcccgccacggacggccatgatgccatgttcctggaggag
gagaggctgctccgagagtacccgcagtcctttgagaaaggggtgccatatttagagttt
cgatacaaaaccagggtgtacaaacagaccaatctggatgagaagcaactggccaaactg
cacactaaggctagcctgaagaaattcatggattatattcaaaccagcgctgtggacaag
atggtcaagttcttagacaaaggtctcgatcccaactaccaggatgctgacaccggcgag
actgctctgtccttggcggtgcagtgtgagccgggtggaggtgaggctatccgggtcctg
gtggagggaggtgctcacattgacttccgcgccaaagatggactcacacccgtacacaaa
gctgtgcgaggccaccgccatacagcccttttggtcctgctgtctcttggtgcgtctccg
gactataaggaccggcgagggctgacgccgctctaccacactgtgctgacagggggcgac
acctcctgctgcgaaacactgctttaccaccacgccaaactaggcatcagggacgagaac
ggctgggacgagacacatcaggcctgtcagcatggtaactcgcagcatttggagcacctc
ctcttctatggggcagattcttcctcccagaatgcctctggaaacactgccttgcacatc
tgtgctttgtacaacaaggaaagctgttcacgaattctgctctatcggggagcaaataaa
gacacaaagaacaacaatgggcagaccccctttcaggtggctgttatgtccggccatttt
gagctgggagaaattatcaaaaaccaccgggatacagatgtggttccctttgtggagtct
ccaaagtacgccccccagaggcgggagagcacccggaccttgacaataccccacccgcat
cctttcctccgggccaacagtgacagcagcatgaacttgccagaatggatggcagtgccc
aacgccccagggaccaacattgtctctgtgcagggctacaagcacacaggaaccctgcgg
agctccagcagtcccagaggagcgaggacgcgttctccatcccgaggaaggatcggagac
aaggaggaccggagcaggcagagtcggagacagggtcctgctcctgccagcacagctgga
ccgactgcaggtcagcggaggcgcctctacagcgctgtcccaggacgagtctttgtagcc
actcgatcacactctgcccagggagagcgcgaaatcagcttcagtaagggagacagggtc
aaagtgttgagtgttggcgagggcgggtactgggagggaacagtcaggggtcgcacaggt
tggttcccctctgactgtgtggaggaagtgatgcttcgaagccaagacaaccgatcagag
agccgtggagaacgagccaaaaggctgttccgccattacactgtggggtcctatgacagc
tttgacgctcccagtgactatataattaaggagaagtcagtgcttctgcagaaaaaagac
agcgagggtttcggctttgtgttgagaggggccaaagctcagactcctatcgaggagttc
accccgaccccagccttccccgccctgcagtacctggagtcagtggacgagggaggcgtc
gcctggagagccggtctcaggatgggggatttcctgatagaggtcaatggtcagaatgtg
gtgaaggtgggtcaccgacaggtcgtcaacatgatccgacaaggtggcaacagcctcatg
gtcaaggttgtcatggtaacccgcaaccccgacatggaggagggttcgaggaagaaaatc
ccccagcagagtaaaagactgagcaccccggctatcgcactaagatctaaatccatgact
tctgaactggaggagatggttgaacgagctgctaccccttggaaaaaaaaatcagaattc
gaaatcctcacaagttacaggagaagaagaggactgtcctatcagatggcattgaataaa
ctggatgaaattcttgcagcagctcagcagaccatcagcaccaatgaggcgccagggaca
cgggggcagggggccaaaagagacagaggacgaagtttctatggcaatgagacaaactac
ggggatcagtcctggatggggatgatgtcgtcagggttgggcctcggctatgaccgtggc
nagtacgcctcaggtcatggcccacagcacggtatgcggcggcagaaatctgcaggggcg
cctgacgaggagaggcagttcctgaatcctccagccngtgagtttgctcgcagtctgtcg
gtgctggcccagacgaaagatccctcccctcccaccacagctccaccagagnctccattc
tcctctgctccgccactaggtntgagagcaaagtcttcccagcagtctgtctccgtgtcc
cagtccacatccacgtctgcccactacagcncctactctcagtcagcgcatttcacccat
gggggccgggaaacagctggttctagcactggccccagtggtggaggcggtgaccacaca
acctcgtatgcacacgcagttggccacacggctcaaagcaggacggcttcgcggaaggtg
gcctattctggcgagcctgttggagctggcacaggagctggtggaggggccaagacagca
ggtctagagaggagctacaccaccgctatccccccatccagcattgccactgtaatgcgc
agcacaaaacaaactacccagatccaaccccagcgtacagaccgcagtgcggctggggct
ggagcaggcggtncccaaggaggcacccggagaggtaagggacccttgatgaaacatcca
aggtagaggacctacgcctgagccagggtaccctggggggccaaaggctcagtgataaaa
gtctccatcaccatccccaccattattgtcaaggccccttcaaaccagcagcagtgacgc
agcagccagggcagcagtgtggaggccgaccctcctgcatcaggagagactgatgaagcc
aaaaacaccacatgccctcctccctccaatcctgctacacagcccccttcccctccttcc
atcccagcaccgccacctccatccttgccttctatgcgtgcccaggataatctggacttc
accagccagtttggggctgccattgttggtgcagctcgccgagaccgggagcggttgcat
gaagcccgcagaaagagcgcctccttgttcatgtctgctgaggaggatgtgagtattggg
agtgatggaataacaaggacacaagtgtcacagcaacagcttagcacacaggaaggttca
tcaacacggctgcgcccgtccaagtctattgacgaaggcatgttctctggggacaatttt
atccatcacacccgcagtatgcctcctgcctttggccttcctgagtactcctcagctgcc
ctggactatcagcctaagtctgtgcctactgacttgtacacatcagcaggcaggcaggca
gcgccctccagtacaaccaccttcattcaccctctaacaggaaaggcccttgaccccaca
tcgccactaggcctcgccctggctgctagagagcgtgctcttagggatgacagcaggtta
aggaggggggcagatcaccacttcacccgccagatgtcgagtgtggtgtttccttcatct
accgtcacctctccgccagtgtcgtccactgcccagtcctccagctcctcttacctggtg
acctcgtcttctctggctggtaccacagccactgctggccgcccaccctcacccagaatc
ctgagaggagttgggagtgtgtggagtgaggaaggcagtggaggagagagggagcgtgaa
ggaggaggggctcgtgaagggcttagagttcgcttctcggaggacaaaacggtccacacg
caccactaccagcctcagccgtatcaaccaacctacaaggagagggagcgggagaggtcg
agggagcgggagaggtcgagggagagggagagggagctgtcgagagaaagagagagggac
aaagagagagagggttacatgaggcgggcagagcaagctgctgccaatgcggcagctgat
agctctgctcagcaggggtcccaccctcagcagcctgggagacccgcttttctcaggatg
gaaagccaagctgatgcctatatcttgtccctcacccctccctcacctccacctaccagt
actcagcagacagcgaacactactgggagcactggtctgatggtccttcctccccctgcc
ccctcaattgatgcggacgatgagtttgtcttcgcagaccctctcccacctccattacag
tttgccaacagcttcgacaggggaattgggggattatcagggtactcacaacacgggatg
cgaccaaacagcctgtcccgccaacagcaggtcccagcccctccacctcctccccctcca
ccaccaccccctccgccccccataaaagaaccatttataagtgggttccctgctcataca
cccctgccttctcctcaggccggagactccactgcctctagcctcacatcgtacgacagt
gaggtggctaacctgactcagtccgctccctccccctcccaaacgtcgcccaaccccccg
ccccctcactcgccctctaccctgcagcccacctcgatgacgggtcctccgccactcccg
tcagtctcaccaccacctcctcctggatcctatcacagacccttctccatgtcccatccc
caccacctttacaacagctctcatactcctgggcgctcttccccgacgcctcccccccac
acagtcacacctccccatggctaccgtggtcccccagcaccttcccccactgctgccacc
gctgctcaacttaggggcactttctcacatgccacgacctccagctgtgccactacaacc
gctgctgctaccaccacaacaagcacctccactcagctctaccatgagcgcacacacacc
acacatacaacatcctccaccactatcacgggcggtcgcaggacaggggagtaccaccgt
cctcaccctgctaccaagaaaggagagtcccaggaaactgttgtggactctggaattgaa
gagctggacagccgtagcagcagtgaccaccacctggacagcatcctggccggcgtccgg
gaaaacaggctagaccgtggggagagaggacggattggaggaggaggtggtgggacaggg
gaatcggaaaggggagcagattttatggagtcttacatgagctacctggacggacaaact
tttgagatgcagaatgccacagcagcagcctccacctacccaaagtcgaacaggttcaga
gagggaggccgcaccagtgatctacacagacagaccagcactgctcctgcatcctttcac
tcccacaggcgaagggaagagcaggaagaggacgaggagggagcggatgaaagcagccgt
gatgggtacgggatgagggacatgcagaatttgggacgtcccatttcaccatactttgat
cgccctcgtactcctgagatgaagcctctctggggcgaggggcagatgtcgggtgaccag
tccgctgcacttttagagggaaaaaagatttaccctcctgcatccagtatgaagcccaac
atcataaatgagctgagcagtaaactgcagcaaagaaccaaggagagctggagcagccag
agaccattgggcagacacaggcacagattttcagaagactcagcctcagctctgagcccc
ccctcagctcgatcccagtcaccatctccgatttcattatcgcagccatcattgtcccca
tcccccacccctgcctcccagtaccccaactggggaagatccccatctcctcaacctcaa
gccatctctcagcctccacgttcacattccccgatttccccaacatcttactccccttac
cccacttccccaaaacacagacctgtctaccgaaccaaagccctagagttccagttcatc
cccagtcgcgagacccgcaaagcagaatcacacttccagcgaaggagagcacccagccct
ctcatctccccggcagagaggcccaagccgggtccaccacggccatcatcccttccgctc
ctccccaccacacctctttacagcgcaatgtacgacctccgaggttccatcacgccgcca
tcacctgggaaccctcttggggatccttacttctctccttctcctcccttgtttgccccc
tctggtgccccacctcctccgaactccgccttagttgtctctcgatccctctctccaact
cacttcctgtccgggacctcctctccgcccctgcaccctctccctccacctacatgcctg
agttacccccacttaccgccaccttccccgacaaagccttttgcatccaagccgctgccc
tactggaccaagtatgacgttgcagactggctaggatacctgaacctgggggagcacaga
gagcatttcctggacaacgagattgacggcacccatctaccctccctaaccaaggacgac
tatctggatctgggtgtgacgcgtgtcggccaccgaatgaacatagaacgagccctgagg
accataatggacaggctgtccagtagcccatttcccattttggttctctcacctcgggat
ggacagactgagaggagaagggatgacggcagccggagctga
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integrated database retrieval system
