KEGG   Cyclopterus lumpus (lumpfish): 117735098
Entry
117735098         CDS       T09199                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03013  Nucleocytoplasmic transport
clum03015  mRNA surveillance pathway
clum03040  Spliceosome
clum05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117735098 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    117735098 (alyref)
   03015 mRNA surveillance pathway
    117735098 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117735098 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clum03019]
    117735098 (alyref)
   03041 Spliceosome [BR:clum03041]
    117735098 (alyref)
Messenger RNA biogenesis [BR:clum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     117735098 (alyref)
    TREX complex
     117735098 (alyref)
Spliceosome [BR:clum03041]
 Complex C
  Other components
   EJC/TREX
    117735098 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    117735098 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_5 RRM_occluded
Other DBs
NCBI-GeneID: 117735098
NCBI-ProteinID: XP_034395429
Ensembl: ENSCLMG00005005776
LinkDB
Position
8:6679923..6683005
AA seq 270 aa
MADKMDMSLDDIIKQNRQQRGGGRGGRGRGRGVSGGGRGGPGRLGVSGGGFGGRGGGSGP
MRGRQNLSRARGRPTPYSRPKQLPDKWQHDMYDNGFSGFSGPAGGGGGAGVETGGKLLVS
NLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRTDAHKAMKQYNGIPL
DGRPMNIQLVTSQIDTQRRPMQGLNRGGGGGMTRGRGGNFRGMQRGRAGRGAPGAGGRGR
GGRGGSSKQQLSAEELDAQLDAYNARMDTS
NT seq 813 nt   +upstreamnt  +downstreamnt
atggcggataaaatggatatgtcactagacgacattatcaagcagaacaggcagcagaga
ggtggaggacggggcggaagaggccgaggccgcggagtctccggcggcggacgaggaggc
cccgggcgtcttggagtcagcggcggtggattcggaggccgaggcggcggatccggcccc
atgagaggccggcagaacctgagccgcgctagaggcagaccaacgccttacagcaggcca
aaacagcttccagataagtggcagcatgacatgtatgacaacggcttcagcggcttcagt
ggccctgctggaggtggcggaggagctggtgtggagactggagggaagctccttgtctcc
aatctggattttggggtctcggatgcagacattcaggaactttttgctgaatttgggact
ctcaaaaaagctgcagttcattacgacagatcaggaagaagcctggggaccgcagatgtc
cactttgaaaggaggacagatgcccacaaggccatgaaacagtacaatggcatcccgctt
gatgggcggcctatgaacatacaactcgtcacatcacagattgacacacagaggcggcct
atgcagggtctgaacagagggggtggaggaggcatgaccagaggccgtgggggcaacttc
agaggcatgcagagaggccgcgcaggacgtggggcacccggtgccggaggaagaggtcgg
ggtggtcgcggcgggagtagcaaacagcagctgtcggcagaagaacttgatgctcaatta
gatgcctacaatgccaggatggacaccagctaa

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