Cyclopterus lumpus (lumpfish): 117735098
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Entry
117735098 CDS
T09199
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
clum03015
mRNA surveillance pathway
clum03040
Spliceosome
clum05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117735098 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
117735098 (alyref)
03015 mRNA surveillance pathway
117735098 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117735098 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117735098 (alyref)
03041 Spliceosome [BR:
clum03041
]
117735098 (alyref)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117735098 (alyref)
TREX complex
117735098 (alyref)
Spliceosome [BR:
clum03041
]
Complex C
Other components
EJC/TREX
117735098 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117735098 (alyref)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117735098
NCBI-ProteinID:
XP_034395429
Ensembl:
ENSCLMG00005005776
LinkDB
All DBs
Position
8:6679923..6683005
Genome browser
AA seq
270 aa
AA seq
DB search
MADKMDMSLDDIIKQNRQQRGGGRGGRGRGRGVSGGGRGGPGRLGVSGGGFGGRGGGSGP
MRGRQNLSRARGRPTPYSRPKQLPDKWQHDMYDNGFSGFSGPAGGGGGAGVETGGKLLVS
NLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRTDAHKAMKQYNGIPL
DGRPMNIQLVTSQIDTQRRPMQGLNRGGGGGMTRGRGGNFRGMQRGRAGRGAPGAGGRGR
GGRGGSSKQQLSAEELDAQLDAYNARMDTS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaaatggatatgtcactagacgacattatcaagcagaacaggcagcagaga
ggtggaggacggggcggaagaggccgaggccgcggagtctccggcggcggacgaggaggc
cccgggcgtcttggagtcagcggcggtggattcggaggccgaggcggcggatccggcccc
atgagaggccggcagaacctgagccgcgctagaggcagaccaacgccttacagcaggcca
aaacagcttccagataagtggcagcatgacatgtatgacaacggcttcagcggcttcagt
ggccctgctggaggtggcggaggagctggtgtggagactggagggaagctccttgtctcc
aatctggattttggggtctcggatgcagacattcaggaactttttgctgaatttgggact
ctcaaaaaagctgcagttcattacgacagatcaggaagaagcctggggaccgcagatgtc
cactttgaaaggaggacagatgcccacaaggccatgaaacagtacaatggcatcccgctt
gatgggcggcctatgaacatacaactcgtcacatcacagattgacacacagaggcggcct
atgcagggtctgaacagagggggtggaggaggcatgaccagaggccgtgggggcaacttc
agaggcatgcagagaggccgcgcaggacgtggggcacccggtgccggaggaagaggtcgg
ggtggtcgcggcgggagtagcaaacagcagctgtcggcagaagaacttgatgctcaatta
gatgcctacaatgccaggatggacaccagctaa
DBGET
integrated database retrieval system