Cyclopterus lumpus (lumpfish): 117735120 Help Entry 117735120         CDS       T09199                                  Symbol xab2 Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism clum  Cyclopterus lumpus (lumpfish) Pathway clum03040   Spliceosome Brite KEGG Orthology (KO) [BR:clum00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     117735120 (xab2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:clum03019]     117735120 (xab2)    03041 Spliceosome [BR:clum03041]     117735120 (xab2) Messenger RNA biogenesis [BR:clum03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      117735120 (xab2) Spliceosome [BR:clum03041]  Complex B   Other components    Prp19-related factors     117735120 (xab2)  Complex C     117735120 (xab2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 Suf TPR_2 TPR_12 TPR_8 TPR_16 TPR_15 ARM_TT21_C ARM_TT21 NRDE-2 LTN1_E3_ligase_6th DUF4515 TPR_1 Motif Other DBs NCBI-GeneID:  117735120 NCBI-ProteinID:  XP_034395467 Ensembl:  ENSCLMG00005019301 LinkDB All DBs Position 8:complement(18001306..18008614) Genome browser AA seq 849 aa AA seqDB search MPSVNGKPDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP GSYKLWYNYLRERRKQVKGKSVTEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVAQCK ITRSRQTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES MIAAKMETTAEMGKSEDEDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK LYEGNPRQIINTYTEAVQTIDPLKATGKPHSLWVSFAKYYEENEQLDDARTIFEKATKVH YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEAVQNRVYKSLK VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG YGLARHAMAVYERATEAVETGERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR DMCQRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQAWKEFEIRHGNEDTIREMLR IKRSVQATYNTQVNFMTSQMMKATTSSTGTVSDLAPGQLGLDDMKMLEQKAQLLAAEAEQ DKPKPKEKILFVRSDTSRSELAELAKQSNPDEIDIDDDEDEDDENQGPEEVQLEQKSVPT AVFGGLKED NT seq 2550 nt NT seq  +upstreamnt  +downstreamnt atgccctcagtaaacggaaaacccgatgttatctttgaggacgatgatctgccatatgaa gaggagatcatcagaaacccgtactcggtcaagtgctggatgcggtacatcgaattcaaa cagaatggagccaaatccaccctcaacatgatctatgagcgggctctgaaggagctgccc ggcagctacaagctgtggtacaattatctgagagagagacggaaacaagtcaaggggaaa tctgtcactgaaccaggctatgaagaggtcaataattgccatgaaagggcattggtgttc atgcataagatgcccagaatatggcttgattactgccagttccttgtagctcaatgcaag atcacaagaagtcggcaaacatttgaccgtgcactcagagctcttcctgtgactcagcac ccgcgtatctggcctctgtatctccgctttgcccgtaaccttcccctgcctgagacagca atccgagtgtaccgcaggtaccttaagctttctccagaaaatgcagaggaatacatagac tacttacggtctgttggtcgcttggatgaagcagctgtgcgactagcagctgttgtcaat gatgaaagctttgtgtccaaagagggcaaatctaactatcaactgtggcatgagctgtgc gacctgatctcccagaaccccgataaagtgacttcactcaatgtaggggccatcatccga ggaggcctcactcgcttcacagaccaacttggaaaactctggtgctctttagccgactat tacattagaagtggtcactttgagaaggcccgtgatgtgtacgaggaagccatccttaca gtggtaacagtaagggatttcacacaagtgtttgatagttatgcccagtttgaggagagc atgatcgcagcaaaaatggagaccacagctgagatggggaagagtgaagatgaggacata gacatggagcttagactggcccgctttgagcagctgatagcccggcggcccctcctgttg aacagtgttctactacggcagaaccctcataatgttcatgagtggcacaagcgggtaaaa ttgtatgagggcaatccacggcagattatcaacacatacactgaggccgtgcagacgata gatccattgaaggccacggggaagcctcactcactctgggtttccttcgcaaaatactat gaggaaaatgagcagctagatgatgccaggaccatttttgagaaggctaccaaggtacac tacaagcaggtggatgaccttgctgcagtgtggtgcgaatatggagagatggagctacgc catgagaactatgaacaggcactgcgcatactgaggaaagctacagcaatcccatccaag aaggcggagtactttgatgcatctgaggctgtacaaaaccgagtttacaagtcgttgaag gtctggtccatgctagcggacttggaggagagtctcggcacttttcagtctaccaaagca gtttatgatcgcatcattgacctccgcatcgccacgcctcagatcatcatcaattatgcc atgttcctcgaagagcacaactactttgaggaaagcttcaaagcatatgagcgtggtatt gctctcttcagatggccaaatgtttatgacatctggaacacttacctcaccaagttcatt gatcgttatgggggcaagaagctggagagagctagagatttatttgaacaagccctggat ggctgtcctgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggga tatggattggcacgacacgccatggctgtctatgaaagagcaacggaggcagtagaaact ggggagagacatcacatgttcaatatctacatcaagagagccgctgaaatttatggagtc acttatacaagagccatttaccagaaagctattgaggtccttcctgatgagcatgcaagg gacatgtgtcagcgttttgctgacatggagagtaaacttggtgagattgatcgggccaga gcaatctactcctactgctcgcagatctgcgacccacgggtgactgctaatttctggcag gcctggaaagaatttgagatccgccatggaaatgaggacacgattagagaaatgctgagg atcaaacgtagtgtccaagccacatacaacacccaggtcaactttatgacctctcagatg atgaaggccacaacaagctccacaggcactgtgtcggatctagctccgggccaattggga cttgatgacatgaagatgctggagcagaaagcacagctgcttgcagcagaggccgagcag gacaagcccaagcccaaagagaagattctcttcgtcaggagtgacacctctcgcagcgag ttggctgagcttgctaaacaatccaatcctgatgagattgatattgatgatgacgaggat gaagatgatgaaaatcagggaccagaggaggtgcagcttgaacagaagagtgtccccacg gccgtctttggagggcttaaagaggattaa

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