Cyclopterus lumpus (lumpfish): 117735539
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Entry
117735539 CDS
T09199
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C-like
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04020
Calcium signaling pathway
clum04080
Neuroactive ligand-receptor interaction
clum04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117735539
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117735539
04082 Neuroactive ligand signaling
117735539
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117735539
Ion channels [BR:
clum04040
]
Ligand-gated channels
Glutamate (ionotropic)
117735539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
NMDAR2_C
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
117735539
NCBI-ProteinID:
XP_034396100
Ensembl:
ENSCLMG00005002157
LinkDB
All DBs
Position
8:complement(2014630..2058451)
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AA seq
1404 aa
AA seq
DB search
MGVRLGCLSDSPWWPPPPPLPLLLLLLSCTAPFCWGRPFGVPTPSVNVAVVFSGSAYQTE
IKGRLSRENFIDLPLEVNPITVLVNNTNPRALLTRICDTLSTNRVHGVVFEDNVGSEAVA
QILDFISTQTAVPIVGISGGSAVVLPYKGEGSNFLQLGSSIEQQINGMFKVMEEYNWDSF
VVITSLYPGYETYVDYVKSFTDTSYFIWELQDVLTFDMSADGLNDVRARRLLQQIDAQVL
LVYCSHEEAQYLFSMASESRLVGXGYIWIIPSLAVGNPDIAPPDSFPVGLISIITDRWRM
SLRKRVRDGVAIVVKGVQSFRKQRGFVPEGQSDCHNPVKPSVTNDTLFRHMLNVTWEHND
FSFNSNGYLVNPAMIIITLDRERQWDKVGTFEMGIMQMRYPVWPRYGSYLEPVSDYRHLT
VATLEERPFVIVEAVDPVTGTCVSNTVPCRRQSNKTESIVGHTEPYTKLCCKGFCIDILK
KLSRTIKFSYDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFS
VPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYCSPVGYN
RSLVSAKEPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASY
TANLAAFMIQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHM
VKYNQKGVEDALNSLKTAKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAL
QKDSRWKRLIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLL
VAMGLSLLVFAWEHMLYWKLRHSVRKAQRLNFLLAISRGIYSCFNGVEQSDHNGSMPSPD
VTANYTQANMLKMLKTAKDMVSSARVENSLDNATKTIENWSRRGVDNVRVGLPPRVTTTD
MTHGRLPYISSITDNHSPYSQRALTPTFSIHYGDCTTQPLLEKPRYTLPARNSQHVLERT
LPISSLSSPHIAMRDPVPSAAASNPHHSSRLYVENPVRHPTSPFLSYREFQVPDIYVEHK
GPLRRKFSYPPDCVSRRRRSHSYVFDAADPRARGDYDEPRACLAELRANHLLNNHAPVAA
PGHYPGSSASCNSCMKSFLEPEMDDVPLLGKDKLNRRASFLKATWGNDRIHQVDETKPST
SASSGRVDMPDLFPRVVVANPKPHKLYGSLGHNLSCYPLSAEPAYLDPAHMGSYPYKQKL
KYSESTRLPSYREAILQNSAALRRSSSTVVHRHYSTYLNSYTDLPVYVGPLAQRPSQFYD
SSKDMCHLFPCASHCPDNAAMLPRMGDRQVVYHNNMFGAYDSTGKREDPCSGNRERRQVL
VARRVNSPYVPKPWGRVSSLESEV
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgtctaggctgcttgagcgactccccgtggtggccgccgccgccgccgctg
ccgctgctgctgctgctgctgtcctgcaccgcccccttctgttggggccggcccttcggc
gtccccacgccctccgtgaacgtggcggtggtgttcagcggctcggcctaccagacggag
atcaaggggcggctgagccgggagaacttcatagacctgcccctggaggtgaaccccatc
accgtgctggtcaacaacaccaacccgcgggcgctgctcacccgcatctgcgacacgctc
tccaccaaccgcgtccatggcgtggtgttcgaggacaacgtgggctcggaggccgtggcg
cagatcctggacttcatttccacccagacggccgtgcccatcgtgggcatcagcggaggc
tccgcggtggtcctgccctacaagggcgagggctccaacttccttcagctgggctcctcc
atcgagcagcagatcaacggcatgttcaaggtgatggaggagtacaactgggacagcttc
gtggtcataaccagcctgtacccgggctacgaaacctacgtggattacgttaagtccttc
accgacaccagctacttcatctgggaactgcaggacgtgctgaccttcgacatgtccgcc
gacggcttgaacgacgtccgggcgcggaggctgctgcagcagatcgacgcccaggtgctg
ctggtctactgctcccacgaggaggcccagtacctgttcagcatggcgtccgagtccagg
ctggtggggnngggctacatctggattatcccaagcctggcggtggggaacccggacatc
gccccgccggacagcttccccgtggggctcatcagcatcatcacggaccggtggaggatg
agcctgaggaagagggtccgggacggcgtggccatcgtggtgaaaggcgtgcagagcttt
cggaaacagaggggcttcgttcccgagggccagagcgactgtcacaaccccgtcaagccg
tcggtcaccaacgacacgctgttcaggcacatgttgaatgtgacctgggaacacaacgac
ttctccttcaacagcaacggctacctggtgaatccggccatgatcatcatcactctggac
cgagagaggcagtgggacaaggtgggaaccttcgagatgggcatcatgcaaatgagatac
ccggtgtggccgcgctacggctcctacctggagccggtgtcggactacaggcacctgacg
gtggccacgctggaggagaggcccttcgtcatcgtggaggcggtggaccccgtgaccggc
acatgcgtcagcaacaccgtgccctgccgacggcagtccaacaagacggagtccattgtg
ggtcacaccgagccgtacaccaaactgtgctgtaaaggcttctgcatcgacatcctgaag
aagttgtcccgcaccataaagttctcctacgacctctacctggtcaccaacggcaagcac
ggcaagctggtccggggcatttggaacgggatgatcggagaggtgttctacaagcgtgcg
gacatggccatcggctcgctgaccataaacgaagagcgctccgagatcatcgacttctcg
gtgccgtttgtggagacgggcatcagcgtgatggtcgccaggagcaacgggacggtctca
ccgtcggcctttttagaaccctacagtccggcggtctgggtgatgatgttcgtcatgtgt
ctgacggtcgtggccgtcacggtcttcgtctttgagtactgcagtccggtcgggtacaac
cgcagcctggtcagcgccaaagagcccggaggtcctaccttcaccatcgggaagtccgtg
tggctgctgtggggaatcgtcttcaacaactcggtccccatcgagaaccccaagggcacc
accagtaagatcatggtcctggtctgggccttcttcgccgttatcttcctggcctcctac
acggccaacctggccgccttcatgatccaggagcagtacatcgacaccgtctccgggctg
agcgacaaaaagtttcaaaagccccaggagcagtaccctccgttccgctttggtacggtc
ccaaatggcagcacggagcgcaacataaggagcaactaccccgagatgcactcccacatg
gtcaaatacaaccagaagggagtggaggatgccctcaacagcctcaaaacagcgaaactg
gatgcctttatctacgatgctgctgtgctgaattacatggctggcaaagacgagggctgc
aagctggtgaccattggcagcgggaaagtgttcgccacgactggatacggcatcgccctg
cagaaggactcgcggtggaaacgcctcatcgacctggccctgctccagttcctggccgac
ggtgacacccagaagctgcagaccgtctggctcacgggcatctgccgcaacgagaagaaa
gaggtgatgagcagcaagctggacatcgacaacatggcgggtgtcttctacatgctgctc
gtggccatgggcctgagcctgctggtgtttgcttgggaacatatgctctactggaaacta
cgtcactcagtccgcaaagcacagcgcctgaacttcctcctcgccatcagcagaggcatc
tacagctgcttcaatggagtggagcaaagcgaccacaacggcagcatgccgagtccggac
gtcaccgccaactacacgcaagccaatatgctcaagatgctgaagacggccaaggacatg
gtgtcctccgccagagtggagaactctctggacaacgccaccaagacaatagagaactgg
agcaggcgaggggtcgacaacgtgcgcgtcggcctgccgcccagagtgacgaccacggac
atgactcacggccgtctgccctacatctccagcatcacggacaaccactcgccatactct
cagagggccctcacgcccaccttctccattcactacggggactgcaccacccagcccctc
ctggagaagccccgctacacgctgcccgcccgcaacagccagcacgtcttggagaggact
ctgcccatctccagcctcagcagtcctcacatcgccatgcgggaccccgttccctccgcc
gccgcttctaacccccaccacagcagcaggctgtatgtggagaacccggtccggcacccg
acgtccccgtttctttcttacagggagttccaggtgcccgacatctacgtggagcacaaa
gggccgctgaggaggaagttcagctacccgcctgactgcgtgagccggaggaggcggtcc
cacagctatgtgttcgacgccgcggaccccagagcgaggggcgactacgatgaacctcga
gcctgccttgccgaattgagggccaaccacctcctgaacaaccacgcccccgtcgccgcc
ccgggacactacccgggcagcagcgcgagctgcaactcctgcatgaagtccttcctggag
cccgaaatggacgacgtaccgctcctggggaaggacaagctcaaccgccgcgcctcgttc
ctcaaagccacgtggggcaacgacaggatccatcaggtggatgaaacaaagccctccacg
tctgcatcctccggccgcgtagacatgcccgacctgtttcctcgtgtggtcgtggccaac
ccaaagccccacaagctgtacggcagtctggggcacaacctgtcctgctaccccttgtct
gcagagcccgcatacttggacccggcccacatgggctcctacccctacaagcagaagctc
aagtactccgagtccacccggctgccctcttacagggaagccatcctgcagaactccgcc
gccctgcgccgctcctcctccacggtggtgcacagacactactccacctacctgaactcg
tacacagacttgccggtgtacgtggggccactggcccagagaccctcccagttctacgac
agctccaaggacatgtgccacttgtttccctgtgcgagccactgcccggacaacgcggcc
atgctgcctcgcatgggggacaggcaggtggtctaccacaacaacatgttcggggcctac
gacagcacaggaaagagggaagacccgtgctctgggaacagggagcggaggcaggtgctg
gtggcccgcagagtcaacagtccctatgtgccaaagccctggggcagggtatctagcctg
gagtctgaggtctga
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