Cyclopterus lumpus (lumpfish): 117735560
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Entry
117735560 CDS
T09199
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum00260
Glycine, serine and threonine metabolism
clum00630
Glyoxylate and dicarboxylate metabolism
clum00670
One carbon pool by folate
clum01100
Metabolic pathways
clum01200
Carbon metabolism
clum01230
Biosynthesis of amino acids
clum01240
Biosynthesis of cofactors
clum04981
Folate transport and metabolism
Module
clum_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
117735560 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
117735560 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
117735560 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
117735560 (shmt1)
Enzymes [BR:
clum01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
117735560 (shmt1)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
117735560
NCBI-ProteinID:
XP_034396137
Ensembl:
ENSCLMG00005006932
LinkDB
All DBs
Position
8:14683781..14690162
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AA seq
484 aa
AA seq
DB search
MSLTNRHNVALSKEMWDSHNKMLLEPLSIGDSEVFSIIKKEKHRQTYGLELIASENFASR
AVLEALGSCMNNKYSEGYPGQRYYGGTEHVDELERLCQKRALETYGLDSEKWAVNVQPYS
GSPANFAVYTAVVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVNPETG
YIEYDRLQENARLFHPRLIIAGTSCYSRNLDYGRLKQIADENGAYLMGDMAHISGLVAAG
VVPSPFEYCDIVTTTTHKTLRGCRAGLIFCRKGVRRVDAKGKETLYNLEALINQAVFPGL
QGGPHNHAIAGVAVALKQAMTSEFKAYQMQVLANCKSLSNALIDRGYKIVTGGSDNHLIL
LDLRSKGTDGGRAEKVLEACAIACNKNTCPGDKSALRPSGLRFGSPALTSRGMIEDDFKK
VAEFIHRGIELTLEVQGSLDPKATLKEFVQALAKGEKFQQQVSEIRAEVDAFAGQFPMPG
LPEL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaacaaataggcacaatgtcgccctgagcaaagaaatgtgggattcgcacaac
aagatgctgctggagccgctctccatcggcgactctgaggtgttctccatcataaaaaaa
gagaagcacaggcagacgtacggtctggagctgatagcgtcagaaaactttgcaagcaga
gctgtgctagaggcgctgggttcctgcatgaacaacaaatactctgaggggtatcctggt
cagaggtactacggtggtacggagcatgtggatgagctggagaggctctgtcagaagagg
gcactagagacctatggtctggactcagagaaatgggccgtcaacgtgcagccatactca
ggttcacctgctaactttgccgtctacacggccgtcgtagagccacatggcaggatcatg
gggctggaccttcctgacggaggtcacctgacacacggcttcatgacagagaagaagaaa
atctccgccacgtccatcttctttgagtccatgccgtataaggtgaatccagaaactggc
tacattgagtatgacagactgcaagaaaacgcccggctgttccaccccagactcatcatt
gcaggtacgagctgctattcccgcaaccttgactacggccgcctgaagcagatcgctgat
gagaatggtgcatacttgatgggggacatggctcacatcagcggattggtggctgctgga
gtggtgccctcaccctttgagtactgtgacattgtaaccacgacaacacacaagacgctg
cgtggctgccgcgctggactcatcttctgcaggaaaggcgtgcggagggtcgatgccaag
gggaaggagactctatacaacttggaggccttgatcaatcaggctgtgtttccagggctg
cagggaggaccacacaaccacgctattgcaggtgttgctgtagctctcaagcaagccatg
acgtcagagttcaaggcctaccagatgcaggtccttgctaactgcaaatctctgtccaac
gcgctcatcgaccgcggctacaagattgtcactggcggctctgacaaccatctgatcttg
cttgaccttcgcagcaaagggaccgatggaggacgagcggagaaggttttggaagcctgt
gccattgcttgtaataagaacacctgtccaggggataagagtgctctgcgccccagcggt
ctgaggtttggctctccagctctgacctccagaggcatgattgaggacgatttcaagaag
gtggccgagttcattcacagaggtattgagctgaccttggaggtgcagggaagcctggat
cccaaggccactctgaaggagtttgttcaggcgctcgccaagggagagaagttccagcag
caggtgtcagaaatccgggccgaggtcgatgctttcgccggccagttccccatgccgggc
ctacctgagctgtag
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