Cyclopterus lumpus (lumpfish): 117735570
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Entry
117735570 CDS
T09199
Symbol
slit2
Name
(RefSeq) slit homolog 2 protein
KO
K06839
slit 2
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
clum00536
]
117735570 (slit2)
Glycosaminoglycan binding proteins [BR:
clum00536
]
Heparan sulfate / Heparin
Axon guidance molecules
117735570 (slit2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
EGF
LRR_4
Laminin_G_2
Laminin_G_1
LRR_5
LRRCT
LRRNT
LRR_9
EGF_TEN
hEGF
LRR_1
LRR_14
JAG1-like_EGF2
EGF_DL_JAG
Laminin_G_3
EGF_2
EGF_3
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
117735570
NCBI-ProteinID:
XP_034396152
LinkDB
All DBs
Position
1:3598849..3633025
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AA seq
1352 aa
AA seq
DB search
MPKLRTFRLHSNNLLCDCHVAWLSEWLRQRPRLGLYTQCMAPPHLRGHNVAEVQKKEFAC
AGHQSSSSSSCSVLQCPESCTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNAIKVIPA
GAFSPYKKLRRIDLSNNQISELASDAFQGLRSLNSLVLYGNKITEISKALFEGLFSLQLL
LLNANKIACLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFASLRAIQTLHLAQNPFICDCH
LKWLADYLQDNPIETSGARCTSPRRLANKRIGQIKSKKFRCSGTEDYRSKLGGDCFADLA
CPEKCRCEGTTVDCSNQKLTKIPDHVPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINL
SNNRISDIEEGSFEGASGVNELILTSNRLENIHHRMLKGLGGLRTLMLRSNRISCVSNSS
FVGLSSVRLLSLYDNQITSMSPGAFDTLHSLSTLNLLANPFNCNCHLAWLGDWLRRKRIV
TGNPRCQSPYFLKEIPIQDVAVQDFACEDGNDDNSCSPVLRCPAECSCLDTVVRCSNKGL
TTLPKGLPKESTELYLDGNHFTQVPAELSNYKHLTLIDLSNNQISTLSNHSLSNMSELLT
LILSYNRLRCIPVRAFDGLKSLRLLSLHGNDISLIPEGAFKDLSSLSHLALGANPLHCDC
HMQWLSDWVKSGYKEPGIARCAGPGDMTDKLLLTTPSKKFTCTGPVDVSIQAKCEPCLSN
PCQNDGTCSNDPVHYYRCTCPYGFKGQNCEEPIHACIGNPCQNGGTCHLKEGEGSNFWCV
CPEGFEGDSCEINFNDCEDNDCENNSTCVDGINNYTCMCSPEYTGELCEEKLDFCAPELN
PCQHDSKCILTPQGYKCECTPGYVGEHCDLDFDDCEENKCQNGGRCIDALNGYTCVCPEG
YSGLFCDFSPPMVLPRTSQCDNHECLNGAQCVVMGADPRCQCLHGYEGERCETLVSVNFV
DRESYLQLPSSLLSPETNISLQIATDEDSGVLLYKGDNDHIAMELYRGRLRVSYETGSYP
PSAIYSVETVNDGSFHAVELVASDQTLSLSIDGGPPKSINSISKQSTLNIDSPLYLGGMP
ERASASGGLSSLQHSSGGRNGTSFHGCLRNLYINGKLQDLGAGLGAGAPGSGAARGTTTQ
WLGHGVEAGCQPCQRGACVQGDCHPTGHRGFTCTCHPGWTGTVCDQQVNNPCDGNKCIHG
TCLPINSYSYSCRCQPGFAGVLCDEQDQDAADPCGPSRCKHGKCRVSGLGKAYCECDGGY
TGDACDREVACRGERVRDVYQRQQGYAACQTQEKVSRLECQGSCAGGADGQGTCCTPLRS
KRRKYTFQCTDGSSFVQEVEKVVKCGCTKCSS
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaactcaggacctttcgcctgcactccaacaacctgctgtgtgactgccatgtg
gcctggctgtcggagtggctgcggcagcgcccccgcctgggcctctacacgcagtgcatg
gccccgccgcacctgcggggccacaacgtggccgaggtgcagaagaaggagtttgcctgc
gcaggtcaccagtcgtcatcatcttcctcctgcagtgtgttacagtgcccggagtcctgc
acctgcagcaacaacatcgtggactgcagagggaagggcctgacggaaatacccaccaac
ctgcccgaaaccatcactgagatacgactggagcagaacgccatcaaggtgatcccggcc
ggagccttctctccttataagaagctgcgcaggatagacttgagcaacaaccagatctca
gagttggcttcggacgccttccaaggtctgcgctcgctcaactccctggtgctgtacggg
aataagatcactgagatttccaaagctctgtttgagggactcttttctctgcagctattg
ttactgaatgctaacaagatagcgtgcctgcgtgtggacgcatttcaggacctccacaac
ctcaatctgctctccctctatgacaacaagctgcagaccatcgccaaggggacctttgcg
tcgctgagagccattcaaacacttcacttagcccaaaacccgttcatctgcgactgccac
ctgaagtggctggcggactacctgcaggataatcccatcgagacgagcggcgcccgctgc
accagcccccggcggcttgccaacaaacgcatcggacagatcaagagcaagaagttccgc
tgctcaggtacagaggattaccgcagcaagctcggaggggactgcttcgccgacttggcc
tgccccgagaagtgccgctgtgagggcaccacggtcgactgctccaaccagaagctcacc
aagataccagaccacgtcccccagtacaccgccgagctgcgcctgaacaacaacgaattc
accgtgctggaggcgacgggcatcttcaaaaagttgcctcagctgaggaagattaacctg
agcaacaaccgcatcagcgacatcgaggaggggtcgtttgaaggagcctcgggggtcaat
gagttgattctcacctccaacaggctggagaacatacaccaccgcatgctgaagggactc
ggcggcctgcgcacacttatgctgaggagcaatcggatcagctgtgtgagcaacagcagc
ttcgtggggttgagctccgtgcgtctcctgtcgctctacgacaaccagatcacctccatg
agccccggagccttcgacacgctgcactccttgtccacgctaaaccttctggccaatccc
ttcaactgtaactgtcacctggcttggctcggcgattggctgaggaggaaacgcattgtc
accggcaaccctcgctgccagagtccgtatttcttgaaggagatccccatccaggacgta
gctgttcaggactttgcctgtgaagacggcaacgatgacaacagctgctccccggtgctg
aggtgtccggccgagtgttcttgtctggacaccgtggtgcgctgcagcaacaagggcctc
accacgctgcccaaaggcctccccaaagagtccaccgaactgtatctggatggtaaccac
ttcacccaggttcccgcggagctctcaaattacaaacacttaacgctcattgatttgagt
aacaaccagatcagcacgttgtccaaccacagcctcagtaacatgtccgagctgcttact
ctaatcttgagctacaaccgcctgcggtgcatcccagtgagggcgttcgatggactcaag
tctctccgtctgctgtccctccacggcaacgacatatcgctgataccagagggagccttt
aaagacctgtcatcgctctcccacctggcgctgggggccaaccccctgcactgcgactgc
cacatgcagtggctgtcagactgggtgaagagcggctacaaggagcccggcatcgcccgc
tgcgccggccccggtgacatgaccgacaaactgctgctcaccacgccctccaagaagttc
acctgcacaggtccggtagacgtgagtatccaggcgaagtgcgagccctgcctgtccaac
ccctgccagaacgacggcacctgctccaacgacccggtgcactactaccgctgcacctgc
ccctacgggttcaagggacagaactgcgaggagcccatccatgcctgtatcggtaacccg
tgccagaatggcggcacttgccacctgaaggaaggagaagggagcaacttttggtgtgtg
tgtccggagggcttcgagggcgactcgtgtgagatcaacttcaacgactgcgaggacaac
gactgcgagaacaactccacctgcgtcgacggaatcaacaactacacgtgcatgtgctcc
cctgagtacacaggagagctttgtgaagagaaactggatttctgcgctccagagctgaac
ccgtgtcagcacgactcaaagtgcattttgacccctcagggatacaagtgcgagtgcact
ccaggctacgtgggcgagcactgcgatctggactttgacgactgcgaggagaacaagtgt
cagaacggaggccggtgcattgacgcgttgaacgggtacacctgcgtctgcccagagggc
tacagcgggctcttctgcgacttctctcccccgatggtccttcctcgcaccagccagtgt
gacaaccacgagtgcctgaacggggcgcagtgcgttgtcatgggagcagacccgcgctgc
cagtgcctccacggctacgagggcgagcggtgcgagacgctcgtcagcgtcaacttcgtc
gaccgcgagtcctacctgcaactcccctccagtctcctctcgccggagaccaacatcagc
ctgcagattgccacagacgaggacagcggcgtgctgctgtacaaaggggacaacgatcac
atcgccatggagctgtacagggggcgcctcagggtcagttacgaaaccggatcctaccct
ccctctgccatatacagcgtggagacagtgaatgatggcagcttccacgctgtggagttg
gtcgcatcggaccagactttgtctctgtccatcgacggcgggccgcccaaatccatcaac
tccatcagcaaacagtccacactcaacatcgactctccgctttacctgggaggtatgcca
gagcgggcctcggcctcagggggcctctcgtccctgcagcatagctcgggcggacgcaac
ggcaccagcttccacggctgcctccgcaacctgtacatcaacgggaagctgcaggacctg
ggggccggactgggggcgggggcccccggctccggggccgcacgtggcaccaccacacag
tggctgggccacggggtggaggcgggctgccagccctgccagaggggcgcctgcgtccag
ggagactgccaccccaccgggcaccgcggcttcacctgcacctgccacccgggctggacg
ggaacggtgtgcgaccagcaggtcaacaacccctgcgacggcaacaagtgtatccacggc
acctgcctcccaatcaactcctactcctactcctgccgctgccagcccggcttcgctggc
gtcctgtgcgacgagcaggaccaggacgccgccgacccctgcggtccgtctcgctgcaaa
cacggcaagtgccgagtgtcgggtctgggcaaggcgtactgcgagtgtgacggcgggtac
acgggagacgcgtgcgacagagaggtggcctgccgaggggaacgggtccgagatgtctac
cagaggcagcaaggctacgcggcgtgccaaacccaggagaaggtctcccgcctagagtgc
cagggcagctgcgcggggggagcagacggacagggcacctgctgcacccccctccgcagc
aaacgcaggaaatacaccttccagtgcaccgacggctcgtcttttgtccaggaagtggag
aaagtggtcaagtgtggctgtacaaagtgttcctcataa
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