Cyclopterus lumpus (lumpfish): 117735869
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Entry
117735869 CDS
T09199
Symbol
zgc:152968
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117735869 (zgc:152968)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
clum03009
]
117735869 (zgc:152968)
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
Pre-60S particles
RNases
117735869 (zgc:152968)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Zwint
KIX_2
Motif
Other DBs
NCBI-GeneID:
117735869
NCBI-ProteinID:
XP_034396655
LinkDB
All DBs
Position
9:complement(6857266..6865079)
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AA seq
1070 aa
AA seq
DB search
MFSSSGLFDGIRCPFLKRGLCERPYCLYKHATELRDAFGASCHSSTVDVAGEQTGYPSND
ETKDDSLQELERINKEIETVRHEVEHEQRRLSRYQTVLADSIKTAPNYSVSKSETGVKNV
DGGTYGLSSRADSTRTYSRARKYVVDNSKPRTDLEYDPLSNFSAGLRSGSSSGKEQKVKN
GQGLKRNAVPCDQKKPVAHQSLLSQSPSPEPLDDSNEDGVLIIDIPPSPDKKRAKAPNPV
DFVAGKSLQDKVEKVETEPVLRLNADASTPPSSTFEKNGENDQAPDTNSNSPCRQHAEQV
QTADQDRVSSPWSSALPQSQNTSIKMQGWFQGKAAAPESYPVPAEPLSVHSSASSLAIAA
ELSSASTGQLFVTDDNEEVIVIPSSSDEEELNYSEMELSDSDPMEECYRIFMEANEDKGN
EEQPDASVGAVDVEKPKLNVKPQALPGKKRVAHDAKHTEQPVVKSRPQPQVLVPLRAPAV
SGFASQPSSTSKIQQVQQRASMLTASVKAGQAFVVSSACQRKPETQSASFPLTQTPENLQ
PAPVQHAHMNYISLGTAVIGADNNLHLILPEGIFPLPGTSSSSQVTSVLTPISQVHTSTL
AVRQMYHPAAVMPLQRYRTTAPVLIPAPARKPSLASAFASSHSSPAAFAAPQAAVHTAVK
AVTTKRRLKQCEAAKEKVPHEIRQRYVNMFTEEFLKTTENVNEAFEKALAEEKAVYNRSV
NKLKYLSVAVNALKRLKNQSAVTAKDENEVKSQQYKGNISLDPEFKGNDDMALYEILRDY
VLTEEKLVESNYPVQHPEKPGSCVLFIDVKKGSADPLKRICCRCGSTYSVNQMGKHIRKE
ECNYHYGKGVTEKVPGGVETRYSCCEGVMGAPGCQVFQVHVHDSISMDGFVSTVPRHPSD
TSCPGVYSLDCEMCYTIHGLELSRVTVVNSSVQVVYDTFIRPDNEVIDYNTRFSGICEED
VKGNRTSLREVQETLLSFVSADTILIGHGLETDLCALKLLHGTVIDTSVVFPHRLGLPHK
LTLNNLTADYLRRIIQESVCGHDTEDDAAACMELMLWKVKEEGKVKKIWI
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgttttcctcgtccggtctctttgatggcatacgttgtccgtttttaaaacgagggctt
tgcgagcggccttactgtctgtacaaacatgccacggagttgcgggacgcgtttggtgcc
tcgtgtcattcgtcgacggttgacgttgcaggagagcaaactggttatccatcgaatgat
gagactaaagatgactccctccaggagctggagcgaatcaacaaggagattgaaaccgtg
aggcacgaggtggaacatgagcagaggcgactgtcccgctaccagaccgtactggcagac
agcataaaaactgcacccaattactcagtttccaagtccgagactggggttaaaaatgta
gatggaggcacttatgggctgtcgtcacgcgcagactctactagaacgtactcccgagcc
aggaagtacgtggttgacaactcgaaaccaaggactgatttggagtatgaccctctgtcc
aacttttctgctggcttgcgatctggcagctcatcgggcaaagagcaaaaagtgaaaaat
gggcaaggtttgaaaaggaacgctgtaccttgcgaccaaaagaagccagtcgcacatcag
tctctgctttcccagtctccatctccagagccactggatgactctaatgaagacggtgtc
ctgattattgacattcctccctctccggacaaaaagagagcgaaagctccgaatcctgtc
gattttgttgctggcaaatccctccaggacaaagtggagaaggtcgaaacggagcccgtt
ttacgtctaaatgcagatgcatcaactcccccgtcatcgacatttgagaaaaatggagaa
aacgatcaagctccagatactaactcgaactcgccgtgcagacaacatgccgagcaggtc
cagacagcagatcaggaccgggttagcagtccgtggtcttcagcgctgccacaaagccag
aatacgtcgatcaaaatgcaaggatggtttcagggtaaagccgctgcacctgaaagctac
ccggtgccggcagaaccactttcagtccattcgtctgcgtcaagtttggcaatcgcagct
gaattatcgtccgcatcaactggacagcttttcgtgactgacgataatgaagaagttata
gtcattccgtccagctcggatgaagaggagcttaactactctgaaatggagctgtccgac
agtgatccgatggaggaatgctacaggatcttcatggaggccaatgaggataagggaaat
gaggagcagcctgacgcgtctgttggcgctgtagatgtggagaagccaaagttaaacgtc
aaaccccaagcattgccaggaaagaagagggtggctcatgatgccaaacatacagagcag
ccagtggttaagagcagacctcagccccaggtgctggttcccctgcgtgcgccagcagtg
tcaggatttgcctcccagccctccagcacctctaagatccagcaggtacagcagagagcc
tccatgctgactgcttcagtcaaagctggtcaggcctttgttgtttcctccgcctgtcag
aggaagccagagacccagagtgcatcttttcctttaactcaaacccctgaaaacctgcag
cctgctcctgtacaacatgcgcacatgaactacatatctttgggaactgccgtgatcggg
gcggacaacaacttgcacttgatcctcccagagggcatcttccctctgcctggcacctcc
agttccagccaagttacgtcggtgcttaccccgatcagtcaagtgcatacgagcacgctc
gccgtgagacagatgtaccatccagctgcagttatgcctctgcaaagataccgcacaacg
gcgcctgtgctcattcctgcgccggcacgtaaaccttcgctggcctcggcctttgcatcg
tcacattcgagtccagctgctttcgccgcgcctcaagctgctgtccataccgctgttaag
gctgtgacgactaaacgtagactgaagcagtgcgaggccgccaaggagaaagtgccccat
gaaatccgacagcgttatgtcaacatgtttacggaggagttcctcaagacgacagaaaac
gttaatgaggcttttgaaaaggctcttgcggaagagaaggccgtgtacaatcgcagcgtg
aacaaactcaagtatctgagtgttgccgtgaacgcactgaagaggctgaagaaccaaagt
gctgttacggctaaagatgaaaatgaagtcaaaagccaacaatacaaaggcaacatttca
cttgatcctgagtttaaaggaaacgatgatatggcgttgtatgagattttgagggactat
gttttgactgaggaaaagctggttgagagcaactatcctgtccagcacccagagaaaccc
ggttcttgtgttctttttattgacgttaagaaaggcagcgcagaccccctcaagagaatt
tgctgtcgctgtggatccacgtactccgtgaaccaaatgggcaaacacatccgtaaggag
gagtgtaattaccactatgggaaaggggtcacagaaaaagtgccaggtggcgttgagacg
cgctacagttgctgtgagggcgtcatgggagctcctggatgtcaagtgtttcaggtgcat
gtccatgactccatcagcatggatgggtttgtttcgactgtccccagacatccctcagat
accagctgtcccggggtctactctttggattgtgaaatgtgttataccattcatggtctg
gagctgtcgagagtgactgttgtcaactctagtgtgcaagtcgtctacgacaccttcatc
agacccgataatgaggtcattgactataacaccaggttttcaggcatctgtgaggaagat
gtgaagggtaaccgcacctccctcagagaggtgcaggagaccttgttgagcttcgtcagc
gccgacaccattctgattggacacggcctggaaacagacctctgtgccctgaagttgctc
catgggacagtgatagacacatcggtggtgttccctcaccgtctgggcctccctcacaag
ctgaccctcaacaacctcacagccgactacctcaggaggatcatccaagagagtgtttgt
ggccatgacactgaggacgatgctgctgcctgcatggagcttatgttatggaaagtcaaa
gaagaaggaaaagtgaagaaaatatggatataa
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