Cyclopterus lumpus (lumpfish): 117736063
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Entry
117736063 CDS
T09199
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117736063 (cacna1ba)
04020 Calcium signaling pathway
117736063 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117736063 (cacna1ba)
Ion channels [BR:
clum04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117736063 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
117736063
NCBI-ProteinID:
XP_034396984
Ensembl:
ENSCLMG00005016965
LinkDB
All DBs
Position
9:complement(24318526..24442568)
Genome browser
AA seq
2389 aa
AA seq
DB search
MARFEDELSSRYGGSGPAGPTRGASRPPGPPVVQRVYKQTMAQRARTMAIYNPIPVKQNC
LNVNRSLFTFSEDNIIRKYAKRITEWPPFEYMVLATIIANCIVLALEQHLPALDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATVGADFDL
TTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFYMGK
FHRTCFRIDTDEQAADFPCGLEAPARTCANGTTCKEYWTGPNFGITNFDNILFAVLTVFQ
CITMEGWVDILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEEKSLDGAWYKRKHNNSVLKRA
KKSKNDLINAEEGEDHFTDISSVGSPFARASLKSKNESSSYFRRKEKRMRFTIRRLVKSQ
SFYWTVLCLVGLNTLCVAIVHYDQPEWLTFALYLAEFVFLGLFLAEMSIKMYGLGPQNYF
HSSFNCFDFGVIIGSIFEVIWAAIKPGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSL
LNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQILTG
EDWNAVMYHGIESQGGVRRGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDE
EEQEEAINKKLALQKAKEVKEVSPMSATNISITAFLTRSRGNAHSSGSSICSVNSLSYVC
TPVHHYLSKEQQRSMKTMSVWEQRANQLRRQNQSSCEVLYSELELEDRLRLSSALHIRPD
MKTHLDRPLVVQPHEGSVFAGHQHHHHKPCMPEAAMTATDPPPPVPRHHHRHRDRDRNRA
RARQETNDNSGTSKGGGHHVHHSHSKDHEGSRGKEEKSKRSRSREGGRRHNNQSSVDDSG
GGGVTSEREHRHHHSHRQSRGGSGTVTSGGRAERRSRQKDGRSSNKDGDRPSRGDSGATG
KRRRHRTHGSRGQSVEGEESNERKKTQSNRDRFGDLEGECLAFSPQQGSGGASWPPAQLE
DSDNHRNIKRTGQTSPPGDTPFIQMNTVDCETMPMNESGPKPILPYSSMFIFGQTNPVRR
LCHYIVTLRYFEMSILVVIAMSSIALAAEDPVSTNAPRNKVLRYLDYAFTGVFTFEMVIK
MVDLGLLLHPGAYFRDLWNILDFIVVSGALVAFAFSSFMGRSQQGVTRGTKGKDISTIKS
LRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFF
YCTDESKGLEKDCKGQFLDYDQDEVAAMPREWKKYEFHYDNVLWAFLTLFTVSTGEGWPT
VLKHSVDATFEDTGPSPGYRIEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSE
CSLEKNERACIDFAINARPLTRYMPQNTQSFQYRMWKFVVSVPFEYSIMIMIALNTIVLM
MKFHGAPDFYEAMLKNLNIVFTTLFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITD
ILVTEINTTDRLLNLSFLRLFRAARLVKLLRQGYTIRILLWTFVQSFKALPYVCLLIAML
FFIYAIIGMQVFGNIALNEDTAINHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSHRA
CDERSGSYGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLD
EFIRVWAEYDPAACGRIKYLDMYQMLLHMSPPLGLGKKCPPRVAYKRLVKMNMPIADDNS
VHFTSTLMALIRTALEIKLASGMVAQRLSDAVLKKELSTVWPSLSQKTMDLLVTPHTANE
LTVGKVYAALMIFDYYKHNRARRLQQQQQQQGTSVSQCKVGALFKPLLPLTHMQEKDLPM
MLNSVEPPSILQPQPKSHAKSQPQTRPSSSSLNNGCMLPGHEHNIKVSSSWVMEKPKEAP
QAKTKRTMSSGPSEDTPDTAVIQESVEMRKMETNSSSTIPVPDLGLENQGRATSMPRLNA
ELQRNHSHHSPGIHLATVPDASPMKRSASTVAPQRLQEVNLRSYNLEKPSQDRPHHHHHH
HHHHCHHRRDRDKDREKRQRSLDTPLGGQPPSSAGAAGEPASDPVASGDRGHDRGRSHDR
KQHSSADKQRYYSCDRYCSREHCHTKSATASCAASPSEGQETSNKQGSGWVKCSPVALSS
PSSTPRRGRRQLPQTPLTPRPGVTYKTANSSPVHIVSSHASLSPGRLSRGLSEHDALRHY
THHFPCSVTLIRSEPFLSRGHGEALGSVYSSLREQLDIFQDAGSLTPSCCAGRSSRTALP
RMMGALLPTLQQNLGVPNGYHFSFGERTSPGSGVRAHMYYQDAEEDEWC
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atggcccgctttgaagatgaactgtccagccgctatggaggcagcggtcccgcgggcccg
accagaggggccagccggcccccggggcctccggtggtccagagggtgtacaagcagacg
atggcccagagagccaggaccatggccatttacaaccccatcccagtcaaacagaactgc
ctcaacgttaaccgctctctgttcaccttcagtgaggataatatcatacggaaatatgcc
aagaggatcaccgaatggcctccatttgagtacatggtcctggccaccattatagcgaac
tgcattgtgctggccttggagcaacacctaccggccttagacaaaactccaatgtcagag
cgtttggacgacacagagccctactttattggaatattttgttttgaggctggcatcaag
atcatcgccctgggctttgcctttcacaaaggctcctacctgcgtaatggctggaatgta
atggactttgtggtggtcctaacagggatcctggccactgtgggggctgactttgatctg
acaacactgagggcggtgagagtgctgcggccgcttaaactggtctctggcattccaagt
cttcaggtggtactgaagtctattatgaaagccatggtgcctctgctgcagatcggcttg
ctgctcttctttgccatcctcatgtttgccatcatcggccttgacttctacatgggcaag
ttccatcgcacatgcttcagaatagacacagatgagcaagcagcagatttcccctgtggc
ctggaggctccagcgaggacctgcgccaacggcacaacctgcaaggagtactggactgga
cccaactttggcatcaccaactttgacaatattctcttcgcggttctcactgttttccag
tgcatcacaatggagggatgggtggacattctctacaacgccaacgatgcttcagggaac
acgtggaactggctgtacttcatccctctcatcatcatcggttccttcttcatgcttaac
ctggtgttaggtgtgctgtcaggggagtttgccaaggagagagagcgggtggagaagagg
caagaattcctgaagcttcgcagacaacagcagatagaaagagagttaactgggtacctg
gagtggatctgcaaagcagaggaggtaatgctggcggaggaagacaagaacgcagaggag
aaatctctggatggagcgtggtacaaaaggaaacacaacaactctgtgctgaaaagagcc
aagaagagtaaaaatgacctcatcaatgcagaggaaggggaggaccacttcactgacatc
tcatctgttgggtcgccgttcgcccgggccagcttgaagagcaagaacgagagctcgtct
tacttcaggaggaaagagaagaggatgcgcttcacaatccgccgtctggtcaaatcccag
agcttctactggactgtgctgtgtctggttggcctcaacacgttgtgtgtagccatcgta
cactatgaccagcctgagtggctgacctttgcactctatctagcagagtttgtcttcctg
ggcctgtttctggcagagatgtccataaaaatgtacggcctcggaccccagaactacttc
cactcatcattcaactgttttgactttggggtgatcattggcagtatttttgaggtgatc
tgggctgccatcaaacccggggcctcatttggaatcagtgtcctgcgggctctgaggctg
cttaggatcttcaaagtcacaaagtactggaactctttgaggaacttggtcgtatctctt
ctcaactccatgaagtctatcatcagcctgctgttcctcctcttcctcttcattgtggtc
tttgctcttctgggcatgcagctgtttggtggccaatttaattttgaagacgaaacgccg
acaaccaactttgacacattcccagcagcgattctcaccgtgttccagatcctaactggg
gaggactggaatgcagtcatgtaccatgggatcgaatcccaggggggtgttcgcagggga
atgttctcctccatttatttcattgttctgactctctttggaaactacacgcttctcaac
gtattcttggccatcgctgttgataacctcgcaaatgcccaggaactcactaaggatgaa
gaagagcaagaggaggccatcaataagaagcttgcactccagaaggccaaggaggtaaag
gaggtcagccccatgtcagccactaacatttccatcacagcttttctaacacgcagtcga
ggtaacgcgcactctagcggctcatccatctgcagcgttaactcactgagttatgtctgc
accccagtccatcactacctgagtaaggagcagcaaaggtcgatgaagacaatgtcggta
tgggagcagagggccaaccagctgaggaggcagaaccagtcgagctgcgaggtcctctac
agtgagctggagcttgaggatcgtctccgcctgtcctcggctctccacatccggcccgac
atgaaaacccaccttgaccggccgctggttgttcagcctcacgaagggtctgtgtttgct
ggtcaccagcaccaccatcacaagccttgcatgccagaggcagcgatgactgccactgac
cctcctcctcctgtgcctcgccaccaccaccgccaccgagacagagacagaaaccgggcc
agagcgagacaggagacgaatgataatagtggcaccagtaagggcgggggccatcatgtc
catcacagccactccaaagaccacgaaggcagccgggggaaagaggagaaaagcaagagg
tcccgcagccgagagggaggcaggagacataacaatcagagctcagtggatgacagcgga
ggtggaggagtcacgagcgagagagagcatcggcatcatcattcacaccggcaatccaga
ggaggcagcgggacagttaccagtggaggcagggccgagcgaagatcccgccaaaaagat
ggacgttcgtctaacaaagatggagatcgaccttccagaggagatagtggagccactgga
aaaaggaggagacatcggactcatggatccaggggccaatcagttgaaggagaggagtcc
aacgaaagaaagaagacccaaagtaacagggacaggttcggtgacttagagggggagtgc
ctcgccttctctccccagcagggctctgggggagcgagctggcctcctgcccaactagaa
gactcagacaaccacaggaacatcaaaagaactggccaaacctccccacctggagacact
cccttcatacaaatgaacactgttgactgtgagacaatgcccatgaatgagagtggaccc
aaacccatcctgccttacagttctatgttcatctttggacaaaccaatccggtgaggcga
ttatgtcactacattgtgactctgcgttattttgagatgtccatcctggttgtcattgct
atgagcagtattgctttggccgcagaggaccctgtctcgacaaacgcccctcgcaacaaa
gtgctcagatatctggactacgcctttactggtgttttcacgtttgaaatggtgatcaag
atggtggaccttggactcttgcttcatcctggagcctacttcagagacctgtggaacatt
ctggacttcatagtggtcagtggggcgctggtggcttttgcattttcgagcttcatgggt
agatcgcaacaaggtgtgaccagggggaccaaaggcaaagacatcagcacaatcaagtca
ctgagggttctcagagtgctcaggcctctcaaaaccatcaaacgtctgccaaaactcaag
gcggtgttcgactgtgtggtcaattctttaaagaatgtgctgaacatcctcattgtttac
atcctcttcatgttcatctttgctgtcatcgcagttcagctcttcaagggaaaattcttc
tactgtacagacgagtccaagggcctagagaaggactgcaaagggcagttcctagactac
gaccaggacgaggtggccgccatgccaagagagtggaagaaatatgagttccattatgac
aatgtactttgggccttcctgaccctcttcaccgtctccactggggagggatggccaact
gtcttgaagcactctgtggatgctacctttgaagacacgggtcccagtccaggctaccgg
atagaaatgtccatcttctatgtcgtctactttgtggtcttccctttcttttttgttaac
atcttcgtggctctcatcatcatcaccttccaggagcagggagacaaggccttgtctgag
tgcagcttggaaaagaatgagagggcttgtattgactttgccataaatgccagacctctg
acacgctacatgccccagaacacgcagtcattccagtacaggatgtggaagtttgtggtc
tcagttccatttgagtactccatcatgatcatgatcgctctcaatactatagtactcatg
atgaagttccatggagctccagacttctatgaagcgatgctgaagaacctcaacatagtc
ttcaccactctcttctctctggaatgtatcctcaagatcattgcttttggtcccttgaac
tacttaaaggatgcctggaacgtgtttgactttgtcacagtgttgggcagcatcactgac
atcctggtgactgaaatcaatactacggataggctgctgaacctgagcttcctgaggctg
tttagagctgctcggctcgtcaagctgctgagacagggctacaccatccgcatcctgctg
tggacctttgtccagtccttcaaggccctgccttatgtttgccttctgattgctatgctg
ttcttcatttatgccatcattgggatgcaggtgtttggcaacatcgcactgaatgaagac
acagctatcaatcaccacaacaacttccgtactttcctccaagcgctcatgctgctgttc
aggagtgcaactggcgaggcctggcacgagatcatgttatcctgtttgagtcaccgagct
tgtgacgagcggtcagggtcctacggcaaagagtgtggcagtgattttgcctatttctac
tttgtctccttcatctttctctgctcctttctgatgctgaacctgtttgttgctgtcata
atggataactttgagtacctaaccagagattcctccatcctgggacctcatcacctcgat
gagttcatccgggtttgggccgagtacgacccggctgcatgtggccgtatcaagtacctc
gatatgtatcagatgctgctccacatgtccccacccttaggtttgggaaagaaatgtcca
ccaagagtcgcatacaagcgcctcgtcaaaatgaacatgcctattgctgatgacaacagt
gtccattttacctccaccctgatggccctgattcgcactgccctagagatcaaactggcc
tcaggcatggtagcgcagcgcttatcggacgctgtgttaaagaaggaattgtctacagtg
tggcccagtctctctcaaaagaccatggatctgttggtgacaccacatacagctaatgaa
ctgactgtagggaaggtttatgcggccctgatgatcttcgactactataagcataatcga
gcgagaaggctgcagcagcaacagcaacaacagggcacgtcagtctcccagtgcaaggtc
ggggctctgtttaagccattgctgcctctgactcacatgcaggagaaagatctgcctatg
atgttaaacagcgtggagcctcccagcattcttcagccccagcccaaatcccatgccaag
tcccagccacagaccagacctagctccagctccctcaacaatggatgcatgctgccagga
catgaacataacatcaaggtatcgtcttcctgggtgatggagaaacccaaggaagcgccc
caagctaagactaagagaaccatgtccagcggcccatcagaggacacaccggacactgcc
gtcattcaggaatctgtggagatgaggaagatggagaccaattccagcagcacgatccca
gtccctgacttaggtctggagaaccagggcagagcaacttctatgcctcgtctcaatgct
gagctgcagcggaaccactcccaccactctccagggatccatctggctactgttcctgat
gccagtccaatgaagcgctcagcctccactgtggccccacagcgactccaggaggtcaac
ctgaggagctacaacctggagaaacccagccaggaccggccccaccaccatcaccaccac
caccaccaccactgccaccatcgccgggacagagataaagacagggagaagaggcagagg
tctttggatacacctctgggtggacaaccacctagctctgctggtgcagcaggagagcca
gcgtctgacccggttgcctccggagatcgaggccacgaccgcggacgttcccacgacagg
aaacaacactcctcggcggataagcagcgctactactcctgcgaccgctactgcagccgg
gaacactgccacaccaaatctgccaccgccagctgtgccgcctcccccagcgaggggcag
gaaaccagcaacaagcagggcagtggttgggttaaatgcagcccagtggcactgagttcc
ccttctagcacgccaagacgtggacgtcggcagctcccccagacccccctcaccccacgg
cctggggtgacctacaagactgccaattcatctcctgtgcatattgtgtccagccatgcc
tctttgagtcctggccgactgagccgcggcttgtcggagcacgacgcccttcggcactat
acccaccactttccctgctccgtcactcttatcagatccgagcccttccttagcaggggc
catggcgaggctctgggcagcgtctacagcagcctcagggaacagctggacatctttcag
gatgcagggtcactgacgcccagctgctgtgccggacgctcgtctcggaccgcactgcct
cgcatgatgggagccctgcttcctactctgcagcagaaccttggggtgcccaacgggtac
cacttcagctttggggaaagaaccagcccaggctctggcgtcagggcacacatgtattac
caggacgcagaagaggatgaatggtgctag
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integrated database retrieval system
