Cyclopterus lumpus (lumpfish): 117736064
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Entry
117736064 CDS
T09199
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117736064 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117736064 (msh3)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117736064 (msh3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
117736064
NCBI-ProteinID:
XP_034396985
Ensembl:
ENSCLMG00005004567
LinkDB
All DBs
Position
9:22618515..22656579
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AA seq
1138 aa
AA seq
DB search
MPKPPKKSRTGQPSISRYFGGPSGGASVNQNPAPHQLSRGKKKLSPDHGDLGLSTKRAKL
CVRDQQQEEHLDCEPASRQSTGEPALARSRGAIGLCTSTREKLQGFTCSAEPGVAQRGEG
KTGGANSSKICDDGGGGGGGGGGARPTSDGTDQCGNENSLQHPEEELEEEDENEWEEDEE
VKDEKGSGIAAAKQGFRLSQFAKSGGGGGGGGGRGGRRGAMPSPPSDSGNPSRRSKSAYT
PLEQQVIQLKQQHKDALLAVECGYKYRFFGEDAEIAAKELNIFCHLDHNFMTCSIPTHRL
FVHVRRLVSRGHKVGVVKQTETSAIKASGANRNALFSRQLSALYTKSTLVGEDVNPVCRL
GDVEEGVCGDVVSDPPDSFLLCVSENWDKPKKQLTVGLVAVQPSTGDVLLDCFPDGQSRS
ELEGRVLKINPVEILVPSDLSEQTHRLLQSIANASAQADDRVRVERRDSAQFEFASAMNT
ATEFYCHAPEKGSRSLSSVASLESPVICCLGPLIQYLQEFNLERVLRSESSFQRLSCESE
GMSLSAATLRNLEILNNQTDGGARGSLLWVLDHTRTPFGRRLMRKWASRPLTDPRSISER
QDAVQEILESQSLTLNAVKSLLSHLPDLERGICSIYHKKSSTQEFYLISSGLSRLGSELR
ALLPAVQSQISSALLRGLLLDTPDLLAPAHSHLEVLNERAAKTGNKTELFSDLSGFPVLR
ERREQIQTVVGQIQDHRKDIRRTLKAPALDYATVSGQEFLIEVKNSLSSTVPPDWVKISS
TKAVSRYHSPFLAERYKKLLQLREQLLLDCQREWTHFLDQFGEHYHTMKRAISHLATMDC
LFSLAEVAKQGDYCRPEVCDGRREIMIQDGRHPAIDLLMGEHNQYVPNLTKLQGDGRRTM
IITGPNMGGKSSYIRQVALICVLAQMGSYVPASEARLGVLDGIYTRMGASDNIYKGRSTF
MEELTEASEIIRRATERSLVILDELGRGTSTHDGIAIAYATLKYFIKDVKALTLFVTHYP
PLCELEQVYPEHVSNYHMAFLLNEPDIAADTGDGEVQPEFITFLYQLTEGAAGRSYGLNV
ARLADIPDDILHTASRKARELESVVNGKRKNKKNRKLLSALLSISGRSSLAEWLLSTA
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagcccccgaagaagtcgcgcaccggtcagccctccatcagcaggtacttcgga
ggtccgagcggcggcgcctccgttaaccagaaccctgctccgcaccagctctcaagaggc
aagaagaaactttcccccgatcacggcgatttgggattgtcaacaaagcgagccaagctc
tgtgtccgagaccagcagcaggaggagcatttggactgtgagccagcatcccgtcagagc
actggagagccggcgctagcgaggagccggggggcaatcggcctctgcacctccacccgg
gagaagctgcaagggttcacctgctcggctgaacccggtgttgctcagagaggagaaggg
aagacgggtggtgccaatagcagtaagatctgtgacgatggaggtggcggtggtggcggc
ggtggtggcgctcggcctaccagtgatggaacagatcaatgcggcaatgaaaacagcctc
caacatccagaggaggagctggaagaggaggatgagaatgagtgggaggaggacgaggag
gtcaaagacgagaagggttcagggatcgctgctgcaaaacaggggttccgcttgtctcag
tttgccaagtcaggaggaggaggaggaggaggaggaggacggggaggaagacggggtgca
atgccgagtcctccgtcagactccggcaacccctccagacgctcgaagagcgcgtacacc
cccctggagcagcaggtcatccagctgaaacagcagcacaaggacgccttgctggctgtg
gagtgtggatacaagtacaggttctttggggaggacgcagagatcgctgcgaaggagctg
aatatcttctgtcacctggatcataacttcatgacgtgcagcatccccacgcaccgcttg
tttgtgcacgtccgccgcctggtgtcccgcggacacaaggtcggtgtggtcaagcagacg
gagacgtctgcgatcaaggcttcgggagccaataggaacgctctgttttcccgtcagctg
agtgctctgtacaccaagtccactctggtgggagaggacgtgaacccggtctgcagactt
ggcgatgtggaggagggggtctgtggtgacgtggtgtcggaccccccagacagcttcctg
ctgtgtgtcagtgagaactgggacaaacccaagaagcagctcacagtggggctggtggcg
gttcagcccagcacaggagacgtgttgctggactgcttcccagatggtcagtcccgctcc
gagctggaaggtcgcgtcctaaagattaaccccgttgagatcctggtgccctctgacctc
tcggagcaaacccacagactcctccagagcatcgctaatgccagcgctcaggccgatgac
cgagtgagagtcgagaggagggacagcgctcagtttgagtttgcctctgcgatgaacaca
gccaccgagttctactgccacgccccggagaaaggctctcgctctctgtcgagtgtcgcg
tccttggagagcccagtgatctgctgtctggggccgctcattcagtacctccaagaattc
aacttggaaagagttcttaggagcgaaagctcgttccaacggctgtcctgcgagtcggag
ggcatgagcctgagcgccgccaccctccggaacctggagatcctcaacaatcagacagat
ggcggcgcgaggggcagtctgttgtgggtgttggatcacactcgcactccgtttgggagg
agactgatgaggaagtgggcgagccggcccctcacagacccgcggtctatctcggagagg
caggacgccgtgcaggagatcctcgagtcgcaatcgctcactttgaatgccgtcaaatcc
ctgttgtcgcatttgcctgacctggagagaggcatctgcagcatataccacaaaaagtct
tccacgcaggagttttacctcattagcagcggcctttctcgactgggaagtgaactgcgg
gccttgctcccagcggtccagtcccagatcagctccgcgctcctccgaggcctcttgttg
gacacgccggacctgctggctccggcccacagccacctcgaggtgctcaatgaaagggcc
gccaagacgggaaataagacggagctgttctcagacctgtctggcttcccggtgcttcgg
gaaagaagagaacagatccagaccgtcgtcggccagatccaagaccaccgcaaagacatc
cgacggacgctgaaggccccggcgctggactacgccaccgtctctggacaggagtttctg
attgaggtgaagaactcgttgtcgtccactgttccacctgactgggtcaaaatcagcagc
accaaggcagtcagcaggtatcactctcccttcctggcggagcgctacaagaagctgctg
cagctccgagagcagctgctgctggactgccagagggagtggacacattttctggatcag
tttggggagcactatcacaccatgaaaagggctattagtcacctagcaaccatggactgt
ctcttttcattggctgaggtggctaaacaaggggactattgcagaccagaggtgtgtgac
ggtcggcgtgagattatgatccaggacggcagacaccctgccatcgacttactgatggga
gagcacaaccagtatgtgcccaacctcaccaaactacagggcgatggcaggagaactatg
ataatcactggtcctaatatggggggtaagagctcctacatccgccaggtggccctgatt
tgtgttctggctcagatgggctcctacgtcccggcctctgaggcccgcctgggcgtgctg
gacggcatctataccaggatgggggcttcggacaacatttacaaaggccgcagcactttc
atggaagagctgaccgaagcctcggagatcattcgccgcgcaaccgagcgctcattagtc
atcctcgatgaactgggacggggaaccagcacccacgatgggatcgccatcgcctatgcc
accctgaagtacttcatcaaagatgtgaaagccctcaccctgtttgtgacccattaccct
cctctgtgcgagctggagcaggtgtatcctgaacacgtgtcgaactaccatatggctttc
cttctcaatgaacctgacatcgccgctgacactggcgacggagaggttcagccagagttc
atcactttcctctaccagttaactgaaggagctgcagggcggagctacggcctgaatgtc
gcccgattggctgacatcccagacgacatactgcacaccgcctctcgcaaagccagagaa
ctggagagcgtcgtcaacggcaagaggaagaataagaagaataggaaacttctctcagct
ctcttgagcatctcgggcagatcgtccctcgcggagtggctgctgtccaccgcttga
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integrated database retrieval system
