Cyclopterus lumpus (lumpfish): 117736069
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Entry
117736069 CDS
T09199
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117736069 (gapvd1)
Membrane trafficking [BR:
clum04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
117736069 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
Motif
Other DBs
NCBI-GeneID:
117736069
NCBI-ProteinID:
XP_034396997
Ensembl:
ENSCLMG00005018748
UniProt:
A0A8C3ADW5
LinkDB
All DBs
Position
9:complement(11666221..11693414)
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AA seq
1459 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNSDVLKTAERLYRAAWIAKQQRINLDRLIL
TSAEASPAECCQHANMLEDTQFVDGYKTLGFQETIYGEFMARLRENPRLVASCLVAGEKL
SHEHTQGVTYTVFTSLYGNCIMQEDESYLLQVLRYLVEFELKESDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLEIDPAKVTERLTPAQQERFGEKGSE
GYKQRVQAAVEDNEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVERLEVGE
VRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMTDDNADPR
RKSSLSKFDKSCVAAFLDVVIGGRAVETPPMSSMNLLEGLSRTAVYISHNQLLVLVDFVR
NVMAGDHLREEEHMALENLVANVPQSRTVKSNSLELTPSNTPQLSPATTPANKKNRLPIA
AARSRSRTNIAQEGEAEASSQESLQELMPEEVLVISLGTGPQSVPGMMSENEVLNLQMAD
GTQGDGHADDTKQHGKPDKTLRFSLCSDNLEGISEGPSNRSNSVSSLDLEGESVSELGAG
PSGSNGVEALQLLEHEQATTQDNLDDKLRKFEIRDMMGLTDDRDISETVSETWSTDVLGS
DFDPNMDEDRLQEIAGAAAENMLGSLLCLPGSGSVLLDPYGSTISETTSEAWSVEVLPSD
SEAPDLKQEERLQELESCSGVGSTSDDTEVREVSSRPSTPGLSVVSGISATSEDIPNKIE
DLRSECSSDFGGKDSVTSPDGEESGHGANHLTSPPSQADSLLAMFDPLSSGEGSSTGTIV
RPKVHYARPPHPPPDPPIPEASALGQETRHSHFMPHCLAQAELEHTKQRHSFPDKLVRSR
SSDIVCPGRRPTSDPGLNRRVAVEERDPAGAFALGPSSSPSKDSLKGEAEDRKDSDDEKS
DRNRPWWKKRFVSAIPKVLYWTAESDVPAPIAAFRKRDKHEKDDVAPERVPQDDPLPRQS
SQAQAAEDILDKYRNIKRTSPSDGATGGASYDGTGDLCVEDSVHDSPREDPLQNISTDDL
PDSASQTAQQHDCKFSFSDAKKKLRLALCSADSVALPIMALATTRNGLPDHMDSDDNEIV
CFLKIQLAEAINLQDKNQMAQIQETTRCVTRFDARTCRKLLAAIAEDYRKRAPYIAYLTR
CRQGLQTSQAHLERLLQRVLRDKEVANRYFTTVCVRLLLEHMESKMLDFIKAFQGCTASD
DKTAAVEDFLRYLYGAMARDAIWQYASEDQLQDAQMAIERSVMNRIFKLAFYPNLDGDSL
RDQLLHEHIQRLIKVVTANHKALQIPEVYLKEAPWPSAQSEIRTINAYKTPRDKVQCILR
MCSTIMNLLSLANEDSVPGADDFVPVLVFVLIRANPPCLLSTVQYINNFYASRLSGEECY
WWMQFTAAVEFIKTIDDRK
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacactctggcccaccacctgaagcaggagcggctgtacgtg
gcatcggagaaacagctgatccagaggctcaacagtgatgtactgaagacagctgagaga
ctgtaccgggccgcatggattgccaaacagcagaggatcaaccttgatcgtctcattctc
accagtgcggaggcctcgccggctgaatgctgccaacatgccaacatgctggaagacaca
cagtttgttgatggctacaagactctgggcttccaggagacaatctatggcgagttcatg
gccaggttaagggagaacccgagactggtggcttcctgtctggtggcaggagagaagctg
agccatgagcacacccagggggtcacctatacagtcttcacctcactttatggtaactgt
atcatgcaggaagatgagagctacctgctacaggtgttgagatatctggttgagtttgaa
ctgaaagagagtgacaaccctcgccgccttctgcgacggggtacctgtgccttcagcatc
cttttcaagctcttttccgagggcctgtactcagccaagctcttcctcaccgccaccctc
catgaacccattatgcagctgctggtggaagatgaagaccacctggagatcgatccagcc
aaggtgacagagcgcctcactccggcccagcaggaacgctttggagagaagggctctgag
ggctacaaacaaagggtgcaggcagctgtggaggacaatgaagccaagctggtagctctg
gtcaacaagtttattggttacctaaagcagaacacctactgctttccccacagcctgcgc
tggattgtgtcgcagatgtacaagactctgtcatgtgtggagcgtctcgaggtgggcgag
gtgcgcaccatgtgtacagacctgctgctgacctgcttcatctgcccagctatagttaac
ccagagcagtatggcatcatctcagatgcccccatcaatgaagtggcccgcttcaatcta
atgcaggtggggcagcttttgcagcagttggccatgaccgatgacaatgcggacccaaga
cgtaaaagcagtttgtctaaatttgataagagttgtgtagctgcctttctggatgtggtg
attggaggaagagcagtcgagaccccacccatgtcttcaatgaaccttcttgaaggcctc
agtaggactgcggtctatatttcacataatcagctgctcgtgctggtggactttgtgcgg
aatgtgatggcaggggaccaccttcgggaggaggagcacatggctctggagaacctggtt
gccaacgtgccccagtctcgaactgtgaagagcaacagtctggagctcactccctccaac
accccccagctctccccagctaccactcctgccaacaagaagaacagactccccatagca
gctgcccgtagccgcagccgtaccaacatagcccaggagggggaggcagaggccagctcc
caggagtccctacaggagctgatgccagaggaggtgctggtgatttcactaggaactggt
cctcagtctgtccctgggatgatgtcagagaatgaggttttgaacctgcaaatggctgat
gggacccagggggatggccatgctgatgatactaagcagcatggtaaaccagacaaaacc
cttcgcttctccctctgcagtgacaacttggagggcatctcagagggcccgtccaatcgt
tctaactctgtgtcctctctggacctggaaggagagtctgtttctgagctgggagccgga
ccgtcggggagcaacggggtggaggcactacagcttttggagcatgaacaggctacaact
caggacaacctggatgacaaactgcgcaagtttgagattagagacatgatgggtctgaca
gatgatcgcgacatctctgagacggtcagcgaaacctggagcaccgatgtgctcggcagt
gactttgaccccaacatggatgaagatcggctgcaggaaatagcaggggcagctgcggaa
aacatgctcggcagcctgctgtgtcttcctggctcgggttcagtgctgctggacccctac
ggctccaccatctcggagaccacaagcgaggcttggagcgtggaagtccttcccagtgac
tcggaagctccggacctaaaacaggaggagcgtctgcaggagctggagagctgctcaggt
gttggcagcacctccgatgacacagaggtcagagaggttagctcgagacctagcacacca
ggcctcagtgttgtctcaggcatcagtgcaacctccgaagacatccccaacaagatcgag
gacctgcggtcagagtgcagctcagactttggagggaaggactctgtgaccagtccagat
ggggaggagtcaggccacggagcaaaccatctgacatctcctccgtcacaggccgattcc
ttactggccatgttcgatcccctctcctctggtgaaggctcctccactggaacaatagtg
aggcccaaagtgcactacgctaggccccctcaccctccccctgatcctcccatccctgaa
gccagtgccctggggcaggagacgcgccactctcacttcatgccccactgcctggcccag
gctgagctggagcacaccaagcagcgccactccttccccgacaagctggttcgtagccgc
agctctgacattgtgtgcccagggcgccggcccacaagtgaccccggccttaaccggcgg
gtagcggttgaagagcgtgaccctgccggggccttcgctttaggaccgtcctcgtccccc
agcaaggactctctaaaaggagaggctgaggacagaaaagacagtgacgacgagaagtct
gatcgcaacaggccgtggtggaagaagcgttttgtttcagccattcccaaagtgctgtat
tggacggctgagagtgatgtcccagctccgatagctgcatttcggaaaagagacaagcat
gagaaagacgacgttgcaccagagcgtgtcccacaagatgacccattgcccagacagagc
tctcaagctcaggcagctgaagacattctggacaagtacaggaacatcaagcggaccagc
ccgagtgatggagccacaggtggagcttcttatgatggtacaggagatctttgtgttgag
gacagcgtgcatgactctcctagagaagaccctctgcagaacatttccactgatgacctc
ccagactcagccagccagacagcacagcagcacgactgcaagttctctttcagtgatgca
aagaagaagttgaggttggcattgtgttctgcagactcggtggctctgcccatcatggct
cttgcaaccacacgaaacgggctgcctgaccacatggactctgacgacaatgagatcgtc
tgcttcctgaagatccagctagcagaggccatcaaccttcaggataagaaccagatggcc
caaatccaggagacaacgcgctgtgtcacccgcttcgacgcacgcacctgcaggaagctg
ctggctgccattgcggaggattacagaaagcgggccccatacatagcctatctaaccagg
tgtcgtcagggcctgcagacctcccaggcccacctggagaggctcctgcagagggtgctg
agagacaaggaggtggctaaccgctacttcaccaccgtgtgtgtccggctccttcttgaa
cacatggagtctaagatgcttgacttcataaaagcgttccaggggtgcacagcatcagat
gacaagacggcagcagtggaggattttctgcgttacttgtatggtgccatggcccgtgat
gccatttggcagtacgctagcgaggaccagctgcaggatgcccagatggctattgagcgc
agcgttatgaaccgcatcttcaaactggccttctaccccaacctggatggagatagtctc
agagaccagcttttgcatgaacatatccagcgactcataaaagttgtgacggccaatcat
aaagctcttcaaatcccagaggtatatctgaaggaggctccctggccctctgcacagtct
gagataaggaccatcaatgcatataagacgccacgagacaaagtccagtgtatactgcgc
atgtgttccaccatcatgaacctcctcagtctggccaatgaggactccgtccctggagcg
gatgactttgtccccgtacttgtctttgtcctcatcagggcaaacccgccctgcctgctg
tccaccgttcagtacatcaataatttctatgccagccggctgagtggggaggagtgctat
tggtggatgcagttcaccgcggcggtggaattcattaagaccatcgacgatcgcaagtga
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