Cyclopterus lumpus (lumpfish): 117736250
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Entry
117736250 CDS
T09199
Symbol
chfr
Name
(RefSeq) E3 ubiquitin-protein ligase CHFR isoform X1
KO
K10644
E3 ubiquitin-protein ligase CHFR [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117736250 (chfr)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117736250 (chfr)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117736250 (chfr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CRD
FHA
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-C3HC4
zf-RING_6
zf-rbx1
zf-CCHH
eIF3_p135
Motif
Other DBs
NCBI-GeneID:
117736250
NCBI-ProteinID:
XP_034397345
Ensembl:
ENSCLMG00005006044
LinkDB
All DBs
Position
9:10012240..10026241
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AA seq
640 aa
AA seq
DB search
MDCYQRGRAWGKLVKVDSSDTVLLFNRECTVGRKKGCYLSFPANKLVSGEHCKIVQDESS
GLVWLEDTSTNGTVINMSKLVKKQTHMLQTGDVIYFVYRKSEPEQNIAYVYHSIQMEHAN
SEHSYDMEGSAHSPAPVPPSEMSLSVEPVMLTKASVEDPQPSTSSSRFCIGSPTTSGPVA
TTAGPALNLAKDAAPAHEKDMDNMEPESKKRKTDDMFTVKDYDLDSPKTSSTEAVCSTKG
GLSSKLTVEVTKTDKMEESLTCVICQDLLHDCVSLQPCMHVFCAACYSGWMERSSLCPTC
RCPVEKIRKNHILNNLVEAYLIQHPEKCRSDEDLKSMERRNKITQDMLQPKVERSFSDEE
GSSDYLFDLSDNDSDSSDIGQPMVMCRQCPGYRREASQMLFATGSNYWLPCLPAPPPIPP
PPKPATEERPATPTGEQPSTSSAIPPASQEYRCLPHGCHLICTCCLQPMPDRRAESNSEQ
VIAQRCAQCQRPFCHMYWGCQRIGCQGCLARFSELNLTDKCLDGVLNNNNYESDILQNYL
SSRGKSWRDLLQESLQSFQQGNYYPSDWRISPNAILCFCCGLRAFKELAYEYRQNIPSPE
LPAAVTSRPNCYWGRNCRTQVKAHHAMKFNHICEQTRFKS
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggactgttatcaaagaggacgagcatgggggaagctcgtcaaagtggactccagtgac
actgtcctgcttttcaacagggaatgcacggtgggcaggaaaaaaggatgttatctgtcc
ttcccagccaacaaactggtctcaggggagcactgcaagattgtgcaagatgaaagctct
gggctggtttggcttgaagacacaagcactaatggtacagtgatcaacatgtccaaactg
gtgaagaagcaaactcacatgctacagaccggcgatgtcatctactttgtctacaggaaa
agtgagccagaacaaaacattgcctacgtttaccactcaatccaaatggagcatgctaat
tcagaacatagttatgacatggaggggtcagcccacagtcctgcccctgttccaccttca
gagatgtcgctctctgtggagcctgtaatgctcaccaaggcttctgtggaggatcctcag
ccctccacctcctcttcccgcttctgcatcgggagcccgaccacgtctggtcccgtggca
accacagccggtcctgctttgaacctggctaaagatgctgccccagcacatgagaaagac
atggacaacatggagccagaaagcaagaagaggaagactgatgacatgtttacagttaaa
gattatgatttggactcgccaaaaacctccagcacagaagcggtgtgttcaactaaggga
ggtctttcgtctaaactaactgtggaagtgactaagacggacaagatggaggagagcctg
acatgtgttatttgtcaagacctgctgcatgactgtgtcagcttgcagccttgcatgcat
gtcttctgtgccgcctgctactcaggctggatggagcgctcttctctttgccccacctgc
cgctgccctgtggagaagattcgtaagaaccacatcctcaacaacttggtagaggcctac
ctcatccagcacccagaaaagtgccgcagtgatgaggacctgaagagcatggaacgccgt
aacaagataactcaggacatgttgcagccaaaggttgagcgctctttctcagatgaggag
ggcagttcagattacctcttcgacctttctgacaatgacagcgactcctcagacattggt
cagcctatggtgatgtgccggcagtgtcctggctacaggagggaggccagtcagatgctg
tttgctacaggttccaactactggctcccttgtctgccagccccacctcctatacctcct
ccacccaaaccggcaactgaagagaggcctgcaacacccacaggggagcagccttcaaca
tcctctgccatccccccagcttctcaggagtaccgctgcctccctcatggctgccatctc
atctgcacctgctgcctccagccaatgccagacagacgggccgagtccaacagcgagcag
gttattgctcaacgatgtgcgcagtgccagcgacccttctgtcatatgtactggggttgc
cagaggatcggctgccaaggctgtctggctcgattcagtgagctcaatctgacggataaa
tgcctggatggtgtgctgaacaacaataactatgaatcggacatcctccagaactacctg
tcttccagagggaagtcatggagagatctgctccaggagtctttgcagtccttccagcag
ggaaactactatccgtcagattggcgtatctctcccaatgccatcctgtgcttctgttgc
ggcctgcgagctttcaaggagttggcctacgagtacagacagaacatcccttcacctgaa
ctgccggctgctgtaacatctcgtcccaattgttactggggacgcaactgtcgtacgcag
gtgaaggcgcatcatgcaatgaaattcaaccacatatgtgagcagacgcgtttcaagagc
tga
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