Cyclopterus lumpus (lumpfish): 117736298
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Entry
117736298 CDS
T09199
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03030
DNA replication
clum03410
Base excision repair
clum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117736298 (pole)
03410 Base excision repair
117736298 (pole)
03420 Nucleotide excision repair
117736298 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clum03032
]
117736298 (pole)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117736298 (pole)
Enzymes [BR:
clum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
117736298 (pole)
DNA replication proteins [BR:
clum03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
117736298 (pole)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
117736298 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
DNA_pol_B
zf-DPOE
DNA_pol_B_exo2
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
117736298
NCBI-ProteinID:
XP_034397423
Ensembl:
ENSCLMG00005008146
LinkDB
All DBs
Position
9:18584147..18599040
Genome browser
AA seq
2294 aa
AA seq
DB search
MVLQNSGRYKAARGQSGGDQENQDDGAAMSALKRLERIQFTDEMDARFGFDRLKEPGEKT
GWLINMHPAEILDGDKRMISAVDYYFIQDDGSRFKVALPFKPYFYIATKTNCEREVISYF
SRKFQGKVSKLEVILKEDLDLPNHLVGLKRSYIKLSFSTVDDLIKVKREISPAVRKNRER
EQSNDSYTSMLSSALSGGNVTSADEVGTSKSISDQLDNIVDMREYDVPYHVRLSIDLKIH
VAHWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAESDQIMMISYM
IDGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNEDNEAALIQRWFDHVQETKPNIF
VTYNGDFFDWPFIETRAALHGLNMYREIGFQKDNQGEYKSSQAIHMDCYRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMDPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTDDGHVMDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVEKTMRHAIEEEEKIPLEQVTNFNEV
CEEIKKKLTSLKEVPNRIECPLIYHLDVAAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GASCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGPPRAFHTLNREDQAKHE
KKRLADYCKRAYKKTHVTRREERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SAAQDSGDAAEMKRCKNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNI
LVKEGFTNDQYHELVDPASLNYNIRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVSKVADYWLDVLYS
KAANMPDTELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPGLHDLDIRSILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHQP
LEAGQAADIEDFGIPAKPLQPAILISTKRKRASQGQDSQVESQDVELTQSWREILGPPPP
MGKTREERLVWLRYHKKKWELQLRQRKERKKRRRLLDGEAQPVGGGVIRDGPTTGLGSFL
RRKARSILDMPWQIVQIAETSHPGLYKLWAVIGHDLHCMKLNIPRVFYVNQKVPKQEEGA
TYKKVNRLLPRSNIVYFLYEYCVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALV
QLGCVCMVNKHVVRDLAGREADTFDLEHLERRSLAQFSYLEPGSVRHIYLYHHSQGHKAL
FGLFIPSQRKASIFVLDTVRSNQMPNLTNLYTAERTALLEKTSEELLPPEKHNFEVRAEN
DAKAINRALQRILLNYKEERRGPTLIAVQSNWELRRLAAGMPVLEEFPVVPVHVVDEISY
NVLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRK
HNHLLWLSPTARPDLGGKEADDSRLVMESDDRGSVEINAQGCYSTVCVELDLQSLAVNTI
LQSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASALASYDETALCSNTFRILKSMV
VGWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVSEFKRL
GSTVVYGNFNRIMLCTKKRRIDDAIGYVEYITNSIHSREIFHSLSISFSRCWEFLLWMDP
SNYGGVKGKLPSSIVYGEEAAKQKKKNQGEGDEGSEDEDEDETNVEEDDGDRETDEVEEL
IESNWNIMQYLPQTASCQKYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRGGSQASQ
QAVGDFSALPGMISFSQEYVSNELTQNFFTITQKIQKKVTGTRSVNQASEMFPVLPGSHL
PLNNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSGEAQFSDPCSSYILPE
VICHHCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQTQYETECIEMALVEALQKKLMSYT
LQDLVCSKCKGVKEANMPLYCRCAGDFDLTFPIKSLSEQITVFRNIASHYSMTFLEETIA
WLLCMSPQIRQNAQ
NT seq
6885 nt
NT seq
+upstream
nt +downstream
nt
atggttctgcagaacagtgggcggtacaaagcggcgcgaggacaaagtggaggggaccag
gagaaccaggacgatggagccgcgatgtcggccctcaagcggctggagcggattcagttt
accgacgagatggatgcccgcttcggtttcgacaggctgaaggagccgggggagaagacg
ggctggctgatcaacatgcaccctgctgagatcctggacggtgacaagaggatgatcagt
gccgtggactattatttcatacaggacgatggaagcaggtttaaggtggccctcccattc
aagccatatttttacattgctactaaaacgaactgtgagagagaagttatctcgtacttt
tcgagaaagtttcaaggaaaggtgtcaaagcttgaagttatcctaaaagaggacctagac
ctgccaaaccacctcgttggcctgaagagaagctacattaagctgtcattcagcaccgtg
gacgacctcatcaaggtcaagcgcgagatctccccggcagtgcgcaaaaacagagagagg
gagcagtccaatgattcctacacctcaatgctatcaagtgccttgtcaggtggcaatgtg
acctcagcagatgaagtcgggacgtcaaagagtatttcagaccagttggacaacatcgtg
gacatgagagagtatgatgtgccctatcacgtgcgattgtccatcgacctcaagatccat
gtggcgcactggtacaatgttcgataccgaggcagcgcttacccaccagagattgttcga
agagatgatcttgtggagagaccagaccctgtggttttggctttcgacatcgagaccacc
aagcttccactgaaattcccggacgcagagagcgatcagattatgatgatctcctacatg
attgatggacaggggtttctcatcacaaacagagagatcgtctctgagaacattgaagat
tttgaattcactcccaaacctgaatatgaaggcccgttcactgttttcaacgaggataat
gaggcggctctcattcagaggtggtttgatcacgttcaagaaaccaagccaaacatcttt
gtgacctacaacggagacttctttgactggcctttcatcgagacccgggccgccctccac
ggactcaacatgtaccgagagatcggtttccagaaggataaccagggagagtacaagtcc
agtcaagccatccacatggactgctataggtgggtaaagagagacagctatctgccggtg
ggaagtcataatttgaaggcagcagcgaaggccaaattgggctacgacccagtggagctg
gacccggaggagatgtgccgcatggcaactgaagagccacagactttagctacctactct
gtgtcagatgccgtagccacatattacctgtacatgaaatatgtgcaccccttcatcttc
gctctgtgcaccatcatccccatggatcctgatgaggtgctccgtaaaggttctggcact
ctgtgtgaagctctgctcatggtgcaggccttccacgcaaacatcgtcttccccaacaag
caggagcaggtcttcaacaagctgaccgatgacggccacgtcatggactccgagacctac
gtgggcggccacgtggaggcgctggagtcaggagtgtttcgcagtgacatcccctgccgt
ttcaagatgaacccggctgcctttgacttcctgctgcaaagagttgagaagacgatgcgc
catgccattgaggaagaggagaaaatacctttggagcaagtcaccaactttaatgaggtt
tgcgaggagattaaaaagaagctgacttccctgaaggaggtcccaaacaggattgaatgc
cccctcatctaccatctggacgttgctgcaatgtaccccaatatcatcctcaccaaccgc
ctgcagccatccgcgatggttgatgaggccacttgtgctgcctgtgacttcaacaagcct
ggggcctcctgccagaggaggatggcctggcaatggagaggggaaatcatgcctgccagc
cgcagtgagttccaccgcatccagcagcaacttgagtctgagaagttcccaccgtttttc
cccaacggtccacctcgagccttccacaccctgaacagggaggatcaggccaagcatgag
aagaaacgcctggcagactactgtaagagggcctataagaagacacatgtcaccaggcgg
gaggagcgagtcaccaccatctgtcagagagaaaactccttctacgtcgacaccgtgaga
gctttcagagatcgccgttacgaattcaaaggacttcacaaggtgtggaagaagaaactg
tccgcagctcaggacagcggagacgctgcggagatgaagcgctgcaaaaacatggagatc
ctgtacgattctcttcagctggctcacaaatgtattctgaactctttctacggctacgtc
atgaggaaaggggcgcgctggtactccatggagatggctggcattgtgtgctacactgga
gccaacatcatcactcaggccagagagctcatcgaacaaatagggaggcccctcgagttg
gacactgatggtatctggtgtgtcctgcccaacaccttccctgagaactttgtggtgaaa
accagcaatgagaagaagcccaaggtgaccatctcttacccaggggccatgctgaacatc
ttggtgaaggagggattcaccaacgatcagtaccacgagctggttgaccccgcgtccctc
aattacaacatcaggtcagagaacagcatcttctttgaggtggacggaccgtatctggct
atgatcctgcctgcctcgaaggaggaagggaagaagctgaagaaaaggtacgctgtgttt
aatgaagatggctctctggctgagttgaagggttttgaagtgaagagaagaggagagctc
cagctcattaagatctttcagtcgtcagtgtttgaggctttcctcaaaggaaccactctg
gaggaggtgtacgcctctgtgtccaaagtggccgactactggctagacgttctgtacagc
aaggctgccaacatgccagatacggagctgtttgaactgatttcagagaatcgttcgatg
tccagaaagctggaggactacggagagcagaagtccacgtctatcagcaccgctaagaga
ctggctgagttcctgggagaccaaatggtgaaagatgctggtctgagctgtcgctacgtc
atctccaggaaacccgagggttcgcctgtcactgaaagagccattcctctggcaatcttt
caggccgagcccagtgtgaaaaaacatttccttcgtaagtggttgaagatgcccggcctc
catgacttggacatccgctctattcttgattggagttattatatagagcggttgggaagt
gccatccagaaaatcatcaccatcccggcagctcttcaacaggtgaagaatccggtaccc
agagtgaggcacccagactggcttcacaagaaactcctggagaaaaatgatatctacaag
caaaagaaaatcagtgagctgttcaccagtgagggcaagagacaggtggcccatcagcct
cttgaagcaggccaagctgcggacatagaggactttgggattccagccaaacctctgcag
ccagccatcctcatcagcactaagcggaagcgggcctctcagggacaggacagccaggtg
gagtctcaggatgtcgagctcactcagtcctggagagagattctggggccgcccccacct
atgggaaagacacgggaggagcggctagtgtggctgcgttaccataagaagaagtgggag
ctgcagcttagacagaggaaggagagaaagaagaggaggaggctgctggatggtgaagct
caacccgtcggaggaggagtgatcagagatggccccaccaccggcctgggaagcttcctc
cgcagaaaagcacgcagcatcctggacatgccatggcaaattgtgcagattgcagagact
agtcatcctggtctgtacaagttgtgggctgtgattggacatgacctccattgcatgaag
ctcaacatccctcgggtcttctatgtcaatcagaaagtcccaaaacaggaggagggagcc
acatacaaaaaggtgaaccgcctgctgccccgctccaacatagtgtacttcctttatgag
tactgtgtaccagaggacatgtaccaggagcacatcaatgagatcaacgctgacctgtct
gctccggacattgaaggcgtctatgaaacacaggtcccgttgctgtttcgtgccctggtg
cagctcggatgtgtgtgcatggtcaataaacatgttgtgagggatctggctggcagggag
gctgacacttttgacctggagcatctggagagacggtctctggcccagttcagctacctg
gaacctgggagtgttcgccacatatacctgtatcatcacagtcagggtcacaaggctctg
tttggcctcttcatcccctctcagcgcaaagccagcatctttgtcctggacacagtcaga
agcaaccagatgcccaacctgactaatctctatacagccgagcgcacggctctcctggag
aagacgagtgaagaactcctgcctccagagaaacacaactttgaggtccgagctgaaaat
gacgcaaaggctattaaccgcgcccttcaacgcatactgctaaactacaaggaggagcgc
cgcgggcccaccctcatcgcggtgcagtcaaactgggagttgcggcggttggcagcaggg
atgccggtgcttgaagagtttcccgtcgttccggtacatgtggtggatgagatcagctat
aacgtgctggactggcaacgccacggtgcccgacgcatgatccgccactacctcaacctg
gacagctgcttgtcacaggctttcgacatggccaggtattaccacttacctgtggggaac
ttgcctcaagatgtgtccatcttcggctcagacttgttcctggcaagacatctacggaaa
cacaaccacctgctgtggctttcgcccactgccaggcccgacctcggaggaaaagaggcc
gatgacagtcgcctggtcatggaaagtgatgacaggggctctgtggagatcaatgctcaa
ggatgctattccacagtgtgtgtggagttggacctgcagagcctggcagttaacaccatc
ctccaatcgcaacacgtcaatgacatggagggtggagctagtctgggggtcagttttgat
gtgatccagcaggcctcgttggaggacatgatgtcggggaaccagggagccagcgctctc
gctagctatgatgagactgctctctgctccaacaccttcaggatcttgaagagcatggtg
gtcggatgggtcagagagatcacgcagtaccacaacgtgtatgccgacaaccaggtgatg
cacttctaccgctggctgcgctcccccagctctctgctctatgaccccgcactgcaccgc
accttgcacaacatgatgaagaaggtgtttctccagttggtttcagagttcaaacgtctc
ggctctactgtggtgtatgggaacttcaacaggatcatgttgtgcactaagaaacgcaga
atagatgatgccatcggctacgtggaatacatcaccaacagcatccactccagggaaatc
ttccactctttgtccatctccttctcccgatgctgggagttcctgctgtggatggatccg
tccaactacggcggtgtgaagggcaaactgccctccagcatcgtgtacggagaggaagca
gccaaacagaagaaaaagaaccagggggagggagatgaaggcagtgaggatgaagacgag
gacgaaacaaatgttgaggaagatgatggggacagagagacggatgaggtggaggagttg
attgagagcaactggaacatcatgcagtatctgccccaaactgcctcctgccagaaatac
ttcctcatgattgtgtccgcttacattgcagcggtctatcacagcatgaaagaggagctg
agacgaaacgctcctggagcaacgccggtcaaaagacgtggcggcagccaggcttcccag
caggccgtgggagattttagtgctcttcctggaatgatctccttctcccaggaatatgtg
tccaacgagctgacacagaactttttcaccatcactcaaaaaatccagaagaaggtgaca
ggtaccaggagtgtcaaccaggcctcagagatgttccccgtcctgcctggatcccacctg
ccactcaacaacccggcactggagtttatcaaatatgtctgccaggtcctttcactggat
gccaacatcgtgaaccaggtgaacaagctgaagagagacctcctgcgcctggtggacgtc
ggagagttttcaggggaagcccagttctctgacccctgtagctcatacatcctgccagag
gtcatctgccaccactgcaatttctgtcgtgacctcgacctttgcaaggacccatctgtg
gcacaagatggatcggttttgccgcagtggttctgctccaactgccagacgcagtatgag
actgagtgtattgagatggctctggtggaagctctgcagaagaaactgatgagctacacg
ctacaggacctggtgtgttcaaaatgtaaaggagtgaaggaagcaaacatgcctctgtac
tgcagatgtgccggagactttgacctcacattcccaatcaagagcctctctgagcagatc
acagtgtttcgcaacatagcgtcccactacagcatgaccttcctggaggagaccatcgcc
tggttgctttgtatgagcccacagatcaggcagaatgctcaatga
DBGET
integrated database retrieval system
