Cyclopterus lumpus (lumpfish): 117736315
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Entry
117736315 CDS
T09199
Name
(RefSeq) spermatid perinuclear RNA-binding protein-like
KO
K13200
spermatid perinuclear RNA-binding protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117736315
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
117736315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DZF_N
DZF_C
dsrm
Dicer_dsRBD
DUF7813
Motif
Other DBs
NCBI-GeneID:
117736315
NCBI-ProteinID:
XP_034397457
Ensembl:
ENSCLMG00005008174
LinkDB
All DBs
Position
9:2180052..2214169
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AA seq
660 aa
AA seq
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MRSFRSFANDDRHVMAKHASIYPEPEELEAVQTLVSTVEGALKKVSDWMDGLRGSSGKTS
GDKGEEDAAETKYAPPDRTPALCGVTRVGPLAKGLLIKGDLDLDLVLMCREKPTKLLLDT
VSTNLPLQIQTMTEDKYEVQPCVLEAAIRVCSTKEPRLRLKITLSSLTMREEHKKKEEEE
EKEEEEEDVLDRKQCRAALAALRHAKWFQARVTDLKSCVVVLRIFRDVCSRVSGWRPLTG
RPLELICEKAVATCNRPLGPGEALRRVMECIASGVLLPGGPGVHDPCEREPTDVLSDLGA
QQASDITNSAQHALRLLAFGQLYKVLNMDPLPSARLLEGGHKRLREVVGSDDRDFIKRMK
VQDWRMTDPNHPMNALMRLNQIHPGLQYRLLSQSGPVHAPVFTMSVEIQGTSYQATGNAK
RTAKLQVALKALQALGFVLAGDADVDSLSADEKSDGEGKNDRLSTSSSSTSITSSTDAQE
SRAPGPILTAGGKNPVMELNEKRRGLKYELISESGSSYDKRFIIEVEVDKQLFRGTGPNK
KVAKASAALSALKSLFSGSKPTSSKKKRPNPLPKRPAASVLTLPALAAARPTRVPVIPRA
PYISTPPTHGYLPQGFGAPYGYSPAGALPPYGGLYIDSAYYQPQTIATPIIIHLGPQDLF
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcgttccgatcatttgcgaacgacgaccgccacgtcatggccaagcacgccagc
atctacccggagccggaggagctggaggccgtccagacgctggtgtccaccgtggaggga
gccctcaagaaggtctccgattggatggacggcctccgcggatcctcggggaagacctcc
ggcgataagggggaggaagacgctgctgagacgaagtacgccccgcccgacaggacgccg
gcgctgtgcggcgtgacgcgggtcggcccattggccaaaggcctgctgatcaaaggggac
ctggacctggacctggtgctgatgtgcagagagaaacccaccaagctgctgctggacacc
gtcagcaccaacctgccgctgcagatccagacgatgacggaggacaaatacgaggtgcag
ccgtgcgtcctcgaggccgccatccgggtctgcagcaccaaggagccccgactgaggctg
aagatcaccctctcctccttaaccatgagggaggagcacaagaagaaggaagaggaggag
gagaaggaggaagaggaggaggacgtcctggacaggaagcagtgccgggcggcgttggcg
gcgctccgacacgccaaatggttccaggccagagtcacagatctcaagtcctgcgtggtg
gtcttgaggatcttcagggacgtgtgcagccgggtgtccgggtggcggcccctcacggga
cggcctctggagctgatctgtgagaaggccgtggccacctgcaaccgcccgctgggtccg
ggggaggccctgcggcgcgtcatggagtgcatcgcctcgggggtcctgctgccaggaggt
ccaggagttcacgacccctgcgagagggaacccaccgacgtcctgtccgacctcggcgcc
cagcaggccagcgacatcacaaacagcgcgcagcatgcgttacgcctcctggcctttgga
cagctttacaaggtcttgaatatggatcctctcccctcagcgaggctgttagaaggaggt
cacaagaggcttcgggaggtcgtcgggtcggacgacagagacttcatcaaaaggatgaaa
gtccaggactggaggatgacggacccgaaccaccccatgaacgccctgatgcggctcaat
cagatccacccgggcctccagtaccgcctgctgtcccagtccggcccggtccacgctccg
gtcttcaccatgtctgtggagatccagggaaccagctaccaggccaccgggaacgccaag
aggaccgccaagctccaggtggccctcaaggcgctgcaggctctgggcttcgtgcttgca
ggcgacgcagacgtggactcgctgagcgctgacgagaagtcagacggcgagggcaagaac
gaccgcttgtctaccagctctagctccacctccatcacctcctccaccgacgcacaggag
tccagagctccgggtccgatcttgacagctggcggtaaaaacccggtgatggagctgaac
gagaaacgccgcggcctcaaatacgagctgatatcggagagcggcagcagctacgacaaa
cgcttcatcatcgaggtggaggtggacaagcagcttttccggggaacgggtcccaacaag
aaagtagccaaagccagcgcggcgctctcggccctgaagagcttgttctccggctccaaa
cccacgagcagcaagaagaaaaggccgaaccctctgccgaagcggccggcggcctcggtg
ctgaccctcccagcactcgctgctgccagacctacgcgggtccccgtcatccccagagcg
ccctacatcagcaccccgcccacacacgggtacctcccccaaggtttcggtgctccttac
ggttacagccctgcaggagccctccctccctacggcggcctgtacatcgacagcgcctac
taccagccgcagaccatcgccacgcccatcatcatccacctgggccctcaggacctcttc
tga
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