KEGG   Cyclopterus lumpus (lumpfish): 117736568
Entry
117736568         CDS       T09199                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03420  Nucleotide excision repair
clum04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117736568 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117736568 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:clum04121]
    117736568 (ercc8)
   03400 DNA repair and recombination proteins [BR:clum03400]
    117736568 (ercc8)
Ubiquitin system [BR:clum04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     117736568 (ercc8)
DNA repair and recombination proteins [BR:clum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117736568 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_WDR75_2nd WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_RIG_1st Beta-prop_WDR11_1st Nucleoporin_N
Other DBs
NCBI-GeneID: 117736568
NCBI-ProteinID: XP_034397880
Ensembl: ENSCLMG00005016018
LinkDB
Position
9:20200652..20211760
AA seq 402 aa
MLGFLTARQAGLDDPLRLRRAESTRRVLSLTLNPDREVDRIHGNAINTIDIEVIEGRYML
SGGADGVIVIYDLENYSGKTQYTCKAVCTVGRSNRYVHKFSVETVQWYPHDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFEDNVYSHHLSPIARKHSLIAVGTKDPKIQLCDLKSGSRIQ
VLQGHRAEVLSVRWSPRHEHILATASADSKVKVWDVRRASGCLFTLDQHNGDKTKAASEA
VNTAHNGRVNGLCFTADGLHLLTTGTDDRMRLWNSATGENTLVNYGKVSNGSRKRLQFTV
SRGCSPELVFVPCESSVAVYAVHTGALVTMLRGHYNNVDCCEFHPDYQELYTGGKDCNIL
AWIPVLRASDVEEESKSANQAAAADPSSVNPAFQDAWSSDED
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgctggggtttctgacggcgaggcaggccggtctggacgaccctctgcgactgagacgt
gcagagtcgacgagaagggtcctgagtctgacgttgaatcctgacagagaggtggacaga
atccatggaaatgccatcaacaccatagacattgaagtaatagaaggcagatacatgttg
tctggtggagcagatggagtgatcgtcatctatgacctggagaactacagtgggaaaaca
cagtacacctgcaaggcagtttgcacagtcggcaggtcgaatcggtatgtccacaagttc
agcgtagagacggtccagtggtatcctcatgacacgggcatgtttgtgtccagctccttt
gacaagaccatgaaagtctgggacactgagacactgaagcctgctgaagtttttgagttt
gaggacaacgtctacagccaccacctgtcccccatcgccaggaagcacagtctcatcgca
gttggcaccaaagaccctaaaatccagctgtgtgatctgaagtctgggtcacggattcag
gttcttcagggtcacagagcagaggtcctgtctgtgcggtggtcgcccagacacgagcac
atcttggcaactgccagtgcagacagcaaagtgaaagtttgggatgtgcgccgggcctct
ggttgtctcttcactctggatcagcacaacggagacaaaaccaaagccgcctctgaagca
gtgaacacggctcataatggcagagtgaatggcctgtgcttcactgccgatggcctccac
ctcctcaccactggaaccgatgaccggatgagactgtggaatagtgctactggggaaaac
acactggtaaattacgggaaggtctccaacgggagtcgtaagaggctccagttcacagtg
tcacggggctgcagcccggagttggtgttcgtgccatgcgagagctcggtggccgtgtac
gccgtccacacgggagcgctggtcacgatgctcaggggtcactacaacaacgttgactgc
tgcgagttccacccagactaccaggagctgtatactggaggtaaagactgtaatatcctg
gcgtggattcctgtcctgcgagcctcagacgtggaggaagagtcaaaaagtgcaaatcag
gccgctgctgcagacccgtcgtcggtgaaccctgcctttcaggacgcatggagcagcgat
gaagattaa

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