KEGG   Cyclopterus lumpus (lumpfish): 117737030
Entry
117737030         CDS       T09199                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    117737030 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clum03021]
    117737030 (taf5)
   03036 Chromosome and associated proteins [BR:clum03036]
    117737030 (taf5)
Transcription machinery [BR:clum03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     117737030 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     117737030 (taf5)
Chromosome and associated proteins [BR:clum03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     117737030 (taf5)
    STAGA complex
     117737030 (taf5)
    TFTC complex
     117737030 (taf5)
    SAGA complex
     117737030 (taf5)
    SLIK complex
     117737030 (taf5)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st TFIID_NTD2 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 WD40_MABP1-WDR62_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_Nup120_160 WD_LRWD1 PEP5_VPS11_N Beta-prop_WDR35_TULP_N Beta-prop_VPS8 PROPPIN LisH_TPL VPS8_N LisH_PAC1
Other DBs
NCBI-GeneID: 117737030
NCBI-ProteinID: XP_034398610
Ensembl: ENSCLMG00005000736
LinkDB
Position
1:11068834..11074965
AA seq 752 aa
MAAVQGGLVDAVEEKDIKTEPSSDGIGNNNANDGGPLSASPSSSASAGSNKSSAGAPEDQ
QTLLAVLQFLKKNKLTESVDILRREAGLPEDSLDLKGGDSSGAGSGGAAGSGDAAGGDAS
ALLSRVTASTASSAAVAPAPTKAAGEDQPDVNVVLSAYSQQGDPKLYPVYYSGLKRFIES
VLDCHRAELSQVFYPLFVHMYLELVYNNYESEAKAFFEKYTGDQECYYEDDLRILSSLSK
REHMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPR
SKSQIDAMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKK
DSMGSKSKKQDPHAPSQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSICFYSFL
NAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERI
MDEKTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYP
VWDTHFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADITCTRFHPNSNYVATGSS
DRTIRLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGNGMMFGEL
KGHTDSIYSLRFSRDGEILASGSMDNTVRLWDALKAFDDLETDDFTAATGHVHLQDNSQE
LLLGTYVSKSTPVIHLHFTRRNLLLAAGSYNP
NT seq 2259 nt   +upstreamnt  +downstreamnt
atggcggccgtacaaggtggtctggtcgacgcggtcgaagaaaaagacataaaaacagaa
ccatcaagcgatggcattggaaataataatgcaaacgacggaggaccgctctctgcgtcc
cccagctccagtgcttcggctggaagtaataaatcgtcggcgggagccccggaggaccag
cagacgctgctggcagtactgcaattcctgaaaaagaacaaactgaccgagtccgtggac
attttgcgtcgtgaagcgggattaccagaggattctctagatctgaaggggggcgactcc
tccggggcaggttcgggtggtgctgcggggagtggagacgcagcaggcggggatgcgagc
gctcttctcagccgggtgaccgcctcgacagcctcatccgccgctgtagccccggcgcca
actaaagctgctggagaggaccaaccagatgtcaacgtggtgctgtcagcttacagccag
cagggagacccaaagctgtacccggtttactacagcggcctgaagaggttcatagaatcg
gtgttggactgccaccgagcagagctgtcccaagtcttctacccgctgttcgtgcacatg
tatttggaactggtgtacaacaattacgaaagtgaggccaaggcgttctttgaaaagtac
accggtgatcaagagtgttactacgaagatgacttgcgaattttgtccagcttgtccaag
agggagcacatgagaggcaatgagactctgctggacttccgtaccagcaagtttgtcctg
cgtatctcccgtgactcttaccagctgctgaagaggcacctgcaggagcgccagaacaac
caaatctggaatatcatacaagagcatctctacattgacatcttcgatggcatgccacgc
agcaagagccagattgacgccatgtctggcagcttggcaggagagggcaaacgagaggcc
aataaggctaaggtttactatggactactgaaggaaccagaaattgagctgcctcttgat
gatgaggatgaggaggcagaaaatgaggagggtaaacccaagaagaagaaacccaaaaag
gacagcatgggctccaagagcaagaagcaggatcctcatgcaccgtcacagactaggatc
cctcttccagaactaaaggattcagacaagctggacaagatcatgtacatgaaggaggcc
accaagaggatccgcctgggaccagataacctgccctccatctgcttctactcttttctc
aatgcttaccagggtctgactgcagtggacttcacagatgactccagcctgatcgcagga
ggctttgctgactccacagtacgggtgtggagtgtcacaccgaaaaagctccgcaaggtc
aagtctgcagcagacttgaatctgattgacaaagagtcggacgatgtgctggagaggatc
atggatgagaagacggccagcgagtcaaagatcctctatggacacagtggcccggtgtat
ggcatcagcttcagcccagacagaaactacttgctatccagttctgaagatggcacagtc
aggctgtggagtctccaaacatttacttgtctggtgggctacaaaggtcacaactaccca
gtgtgggacacacacttttccccccatgggtactattttatctccgggggacacgacaga
gttgcccgtctctgggcaacagatcactaccagcctctgaggatgttttctggtcaccta
gctgatatcacttgcacccgcttccaccccaactccaattacgtggccacgggttcttct
gatcgcaccatccgactctgggacgtcctgaacggaaactgtgtgcgcatcttcaccggt
cacaagggtcctatccatgcgctggccttctctcccaatggtaagttcttggcttcagga
gccactgatggcagagttcttctgtgggacattggaaatgggatgatgtttggagagctt
aaaggccacacggactccatctactccctccggttcagcagggatggagagatcctcgcc
tccggctcaatggacaacacggttcgtctgtgggatgctctgaaagcatttgacgattta
gagacagatgatttcacagcggctacaggacacgtccatctacaagataactcccaggag
cttctgctgggcacctacgtgtcaaaatccacacctgtcatacaccttcacttcacccgc
cggaacctgctgttggccgctggttcctataatccatga

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