KEGG   Cyclopterus lumpus (lumpfish): 117737079
Entry
117737079         CDS       T09199                                 
Symbol
cul4b
Name
(RefSeq) LOW QUALITY PROTEIN: cullin-4B
  KO
K10609  cullin 4
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03420  Nucleotide excision repair
clum04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117737079 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117737079 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:clum04121]
    117737079 (cul4b)
   03400 DNA repair and recombination proteins [BR:clum03400]
    117737079 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117737079 (cul4b)
Ubiquitin system [BR:clum04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     117737079 (cul4b)
DNA repair and recombination proteins [BR:clum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      117737079 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117737079 (cul4b)
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117737079 (cul4b)
SSDB
Motif
Pfam: Cullin SecA_SW ADH_zinc_N COG5_C
Other DBs
NCBI-GeneID: 117737079
NCBI-ProteinID: XP_034398615
LinkDB
Position
10:16953203..16962240
AA seq 506 aa
MSNPTATLNSSSSSSSSSSSSSPTALHIQKKLRFEDSVDFIGLDVKMAEEAAAAAAASCS
NNKSKAAFLPGGAGHHANGLTKPAGSGIFSNSKPGAAKKLVIKNFKEKPKLPENYTQETW
QKLKEAVEAIQNSTSIKYNLEELYQAVENLCSHKISAKLYKQLRAACEDHIKAQINQFRE
DALDSVLFLKKIDTCWQDHCRQMIMVRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYII
SDLKVQSKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLY
AAEGQRLMQEREVPEYLHHVSKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATL
QKGLTHLLDENRIQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQ
ELLDFKDKVDHVIDACFMKNEKFVNXMKEAFATFINKRPNKPAELIAKHVDSKLRAGNKE
ATDEELEKMLDKIMIIFRFNLWKRCF
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtcaaacccgacagcgaccctgaattcttcctcttcttcctcctcttcctcttcctcc
tcgtctcccaccgcgctgcacatccagaagaagttgaggtttgaggattcggtggatttc
attggactggatgtgaaaatggccgaggaggcagctgccgccgccgccgcttcgtgctcc
aataacaaaagcaaagccgcgttcctgcccggtggcgcggggcaccacgcgaacgggctg
acgaagcccgcgggctccggcatcttctccaacagtaaacccggagcggccaagaaacta
gtcatcaagaacttcaaagaaaagcccaaactgcctgagaactacacgcaggagacatgg
cagaagctgaaggaggcggtggaggccatacagaacagcacttcaatcaagtacaatcta
gaggagctctatcaggctgtcgagaacttgtgctcccataagatatctgccaagctttac
aaacagctgagggccgcgtgtgaagaccacatcaaggcacaaattaatcaattcagagag
gatgccctggacagtgtgcttttcctaaagaaaattgacacgtgctggcaagatcactgc
agacaaatgatcatggttcggagtatatttttgtttttggaccgcacctatgttttacaa
aattcaatgctgccatcaatctgggacatgggtttggagctgttcaggttctacatcatc
agtgaccttaaagtccagagtaaaaccatcgacgggattctgctgctcattgagagggag
cgaaacggggaggcgatagaccgcagtctcctgaggagcctgctgagcatgctctctgac
ctgcagatttatcaggactcctttgagcaacgctttttggaagaaaccaatcgtctgtat
gctgcagagggacagaggctgatgcaggagagagaggtaccagaatatctccatcatgtc
agcaagcgattagaggaggaggccgacagagtcatcacatatttagaccagagcacacaa
aaaccgctcattgctaccgtggagaagcagttgctgggtgaacatctcacagctactctg
caaaaagggctgactcacctgctggacgagaacagaattcaggatctgtctcttctctat
cagctcttcagtcgagtgcgaggtggcgttcaggttctcctgcagcactggatagagtac
ataaaggcttttggaagcacaatcgtaatcaatccagagaaagacaaaacaatggtgcaa
gagttgctggacttcaaggacaaggtggatcacgtcatcgacgcctgcttcatgaagaac
gagaagtttgtcaacngcatgaaggaggctttcgcaacgttcatcaacaaacggccaaat
aaacccgcagagctcatagcaaaacatgtggattcaaagctacgggcaggaaacaaagaa
gcaacagatgaagaactggagaagatgctggataagatcatgataatctttagattcaat
ctatggaaaagatgtttttga

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