Cyclopterus lumpus (lumpfish): 117737139
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Entry
117737139 CDS
T09199
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117737139 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117737139 (atrx)
03036 Chromosome and associated proteins [BR:
clum03036
]
117737139 (atrx)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
117737139 (atrx)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117737139 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
117737139
NCBI-ProteinID:
XP_034398731
Ensembl:
ENSCLMG00005020135
LinkDB
All DBs
Position
10:complement(10778143..10812224)
Genome browser
AA seq
2137 aa
AA seq
DB search
MSLASSESHRDQMSEKVEEPGSSTETMKPSSRNKRNSTTVSKHTGPKESDASAESENEGV
SSDNPSDNNTSSVSKGTLVIRPAGNDNKGAMKLRVDFKHKHTEDTLQKKVNCTACGKQVN
QFQRNSVYEHPALKVLICKSCYKYYTSDDINRDSDGMDEQCRWCAEGGKLICCDYCNNAF
CKKCILRNLGRKELSVITDENSKWHCYVCRSEPLQDLVSKCHSIMEKQELKDPKPDKSEE
HESKRHKNKAVREHKTIVNGKEHTEGSGTMTFSYKKLQVPKELIKKAKKLVETTTGLNNT
FIQFIQQAAEEQGDKSIRYRHLKAFRAVLADLKKAHSALEVALGPEFKNMELQNGNEGQH
IVRKSTCVVSPVENDMDNMTDAEEAGDDQAEEEGEEEEEEEEEVANDNLAEEKAEALAEE
EKAEDLAEEEKAESLAEEENAETLAEKDDDLAEEEEEEEEEDEEEEANNGLEEEEADNDL
VAAEEAATDVVLKKTNVASEEVHDIAAKDADNPEDEKARHATADEADMGQPNEQEMSDTK
MKDNQTETNLTKKKIKTEACEDGLVSAGEMSLDHDIMSVPPSVPEELFQMVESLADSTML
SQSDSVTDAVKKSSGNSKDSQPPQPKVKNLIVKLTPVPVVTTRGSRSAVSKNREKARETQ
KKCVDDREKEKGDAAKAPVDMTASPPPSRRSSRLKTTPLRKQAENKGKEESSDSDEDRKS
KSKSSKKSSKNNKENVKETTVSEKKTMDSDSDEIPNILLEKAAAGCSTDEEQGSTSAKKC
LFKLKNTSTQDTDKASKRKRKSESSDSDMAIKSKKTLKKKKKQTGSDSTNSDSDQEKESK
SKVATVKRRSSRVKKQDEAKEEDKSSPERKAAKRKRSYEVKRKGRSPKAASKLQSSSSEE
EQQAEGDSGEDSDEQKIKPIVEDSVVGGSGPVHQSSGDEEDDNARVSQDCEDDDDDPENR
IAKKMLLAQIKSNYSSGAESSSDNEGADEDEKSSRKVKKDDDDEEDEEQQDEDSEDSSSE
VEVKKHGGRHKLLRHKLSLSEGESGEEKAASKDKKGGKKKSGKKVHSDASSDSDSDFEKS
ESSEESGISEELSESENEGKSRKTRSSKKKAEAKQRSYKQQKKKKRRRIKVQDSSSSNEK
SGKEGDDDDDEDHKGRKKIRKILKDDKLRTETRDALKEEEDRRKRIAEREAIREKLREVL
LVKETSHVISPCPITTKLVLDEHEETKEPLVQVHRNLVTKLKPHQVDGVQFMWDCCCESV
KKIEKSSGSGCILAHCMGLGKTLQVVTLLHTLLLCEKLDFTTALVVCPLNTVLNWLNEFE
KWQVGLKDDESLEVIELATVKRPQERAYALQRWQDMGGVIIIGYEMYRNLTQGRNIKSKK
LKEIFQKTLVDPGPDMVICDEGHILKNEASAVSKAMNSIRTRRRIVLTGTPLQNNLVEYH
CMVNFIKENLLGSVKEFRNRFINPIQNGQCADSTLQDVRIMKKRAHILYEMLAGCVQRKD
YTALTKFLPPKHEYVLSIRVTPIQCKLYRYYLEHFTGVGNAMEGGRGRAGTKLFQDFQVL
SRIWTHPWCLQLDYISKENRGFFDEDSMDEFIASETEESSMSMTSEDEKAKKKKKLGRGK
KRGSDDSDSDEVEVIKEWNTCTRGKNGESRSRPELVEEPRAASSTPGSPGHDWHKEFVVD
ADAEILQHSGKMMLLFEILRMAEEVDEKVLVFSQSLISLDLIEDFLELSCRAKDDEKVSP
YKGEGKWFRNIDYYRLDGSTNATTRKKWAEEFNDTSNIRGRLFLISTRAGSLGINLVAAN
RVIIFDASWNPSYDVQSIFRVYRFGQIRTVFVYRFLAQGTMEAKIYDRQVTKQSLAFRVV
DQQQIERHFTGVELAELYTFEPEMLDDPSAKKSKKATPVLPKDTFLAEMLQNNKDQIVCY
HEHDSLLDHKEEEALSEEDRKAAWTEYEAEKKGVFMRNNYQSAYPQMDMGNSNYFSFNMA
ALASMTNQQLEDLINQGRQKVIEATNALKTLARESLEDAIARLWKENPALTESQVQSMAL
GQQATLEAEIKLREATYRDVLTRQQTLMMYVQKLITNRKVQEQQLAMANQASYLNQLAMQ
NGMMGGGGLSQMDLVGLYQQLHGLGGMGKNPGPSKGL
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggcttcttcagaatcgcacagagaccagatgtcagaaaaggtagaggagcct
ggaagctcaacagaaactatgaagccctcttctcgcaacaagaggaattccactactgta
tctaagcacactggaccgaaagaatctgatgcctcagctgagagtgaaaatgaaggtgtc
tcttctgacaatccttcagacaataatacaagcagtgtatcgaaaggcactttagtcata
aggccagctgggaatgataataaaggtgccatgaagctcagagtagatttcaaacacaaa
catacagaagataccctgcagaagaaggtaaactgcactgcctgtggtaaacaagtaaac
cagtttcagcgcaactctgtctacgagcatcctgcactcaaagttcttatttgcaagtca
tgctacaagtattacacaagtgatgacattaacagggactctgatgggatggatgagcag
tgcaggtggtgtgctgaaggtggcaagctcatctgctgtgactactgcaacaatgccttc
tgcaagaagtgcatcctgcgcaatttgggcagaaaggagctgtctgtcattacagatgag
aactcaaaatggcactgctatgtctgcaggtcagagcccctccaggatctggtctccaaa
tgccacagcatcatggaaaaacaagaactcaaggatccaaaaccagacaaaagcgaggaa
catgagagcaagagacacaagaacaaagcagtgagagagcacaaaaccattgtcaatggg
aaagaacacaccgaaggctcaggcaccatgacattctcctacaaaaaactgcaggtgccc
aaagaacttataaagaaagcaaagaagcttgttgaaactactactggtctgaacaataca
ttcatccagttcatccaacaggcagctgaggagcaaggagataagtctatcaggtatcgg
catttgaaagccttcagggccgtgcttgctgatttgaaaaaagcccacagtgctttggag
gtggctttggggcctgaattcaaaaacatggagttacagaatggtaacgaagggcaacat
attgtgagaaagagcacttgtgttgtatcccctgtagaaaacgacatggataatatgact
gatgctgaggaggctggtgatgaccaagcggaggaggagggggaggaggaggaggaggag
gaggaggaggtggccaatgacaacttagcagaggagaaggctgaagccctagcagaggag
gagaaggctgaagacttagcagaggaggagaaggctgaatccctagcagaggaggagaat
gctgaaaccctagcagagaaggacgacgacctagcggaggaggaggaggaggaggaggag
gaggatgaagaagaggaggccaacaacggcctggaagaggaagaggccgacaacgaccta
gtggcggcagaggaggcagccaccgatgtcgtgctgaagaaaaccaatgtagcgtcggag
gaggtccatgacatagcggcaaaggacgctgataacccagaagatgagaaggctcgccac
gcaacagcggatgaggcagacatggggcagcctaatgaacaggaaatgtctgatactaaa
atgaaagacaaccaaacagaaactaatctaaccaaaaagaaaattaaaactgaagcatgt
gaagatgggctagtgtcagctggtgaaatgtctcttgatcacgatataatgtctgtgcct
ccttcggttcccgaagagctttttcagatggtggagagtcttgcagattccaccatgctc
tcacagtctgattcggtcacagacgctgttaaaaagtcaagtggaaactcaaaagactct
caacctccccagcccaaggtgaagaacctcatagttaaactgactcctgtgccagtcgtg
acgacacgtgggtcaaggtccgccgtgtccaaaaatagggaaaaggctagagagacgcaa
aaaaagtgtgttgacgatcgtgagaaggagaaaggcgatgctgctaaagcaccagtagat
atgacagccagcccaccacccagccgtcgttctagtagattgaagaccactcccctgaga
aagcaggctgagaataagggcaaggaagaatcctcagattcagatgaagatcgtaagagc
aagtctaaatcttccaagaaatccagtaaaaacaacaaagagaatgtgaaggagaccacg
gtttcagaaaagaagacgatggattctgactcggacgaaattcctaacatactgctggag
aaagcggcggcaggctgcagcacagatgaggaacagggaagcacaagtgctaaaaagtgt
ttattcaaactaaaaaacacatctacacaggatacagacaaggcgtccaaacgcaaaagg
aagtctgaaagctctgactcagacatggcgatcaaaagtaaaaaaacgttgaagaagaag
aagaaacagactggctcagactcgactaactctgactctgaccaggagaaggagtctaag
agtaaagtggccacagtgaagaggagatctagccgtgtaaagaagcaagatgaagccaaa
gaagaagacaaaagctcacctgagaggaaggcagccaagcggaaaaggtcttatgaagtt
aagcgcaagggaaggagccccaaagcagcttccaagctgcagtcgtcctccagtgaggaa
gagcagcaggctgaaggcgattccggagaagacagcgacgagcaaaaaatcaagcccatt
gtggaggatagcgtggttggaggaagtggaccggtccatcagtcctcaggagacgaggag
gatgataacgcgagagtctctcaggattgtgaagatgatgacgatgatcctgaaaacaga
attgcaaagaaaatgcttcttgcccaaataaagtccaactattcttctggagctgagagc
tcctctgataatgaaggagcagatgaggatgaaaagtcctccaggaaagttaaaaaggat
gatgatgatgaagaagatgaagagcaacaagacgaggattcagaagactctagttctgaa
gtagaagtcaagaagcatggaggacgccacaaattacttcgtcataaactctcgctgagt
gagggtgaatccggagaggagaaagctgccagtaaagacaaaaaggggggcaagaagaag
tcggggaagaaagttcacagtgatgcctcttcagactccgactctgactttgagaagtca
gagtccagtgaagagtcggggataagcgaggagcttagtgaatcggagaacgaaggaaaa
agtcgaaagaccagatcttctaagaagaaagctgaagcaaaacagagaagttacaagcag
cagaagaagaagaagcgacgcaggatcaaagttcaggattcctcttccagcaatgagaag
agtggaaaggaaggtgatgacgatgatgatgaagaccacaaaggacgcaaaaagatccgc
aaaatcctaaaggacgacaagctgcggacagagacgagagatgctctgaaagaagaggag
gataggaggaaacgtatagctgagagagaggcaatcagggagaaacttcgagaggtgctt
ttggtgaaggagacctcccatgtaatctctccctgtcccatcaccaccaaactggtgctt
gatgagcatgaagagaccaaagagccgctggtgcaggtgcacaggaaccttgtcacaaaa
ctcaaacctcaccaggttgacggggtgcagttcatgtgggactgttgctgtgaatctgta
aagaaaattgaaaagtcttctggctccggttgcattctcgcccattgcatgggtctgggg
aaaactctgcaggtggtgacgttacttcacacgttactgctttgtgagaagctcgacttc
accacagcactggtggtttgtcccctgaacactgtccttaattggctcaatgagtttgag
aagtggcaagtaggattgaaggatgacgagagtttagaggtgattgagctggccacagta
aagaggccacaggagcgagcatatgctctccagcgatggcaagatatgggtggcgtaata
atcattggctacgagatgtacagaaacttgacgcagggcaggaacatcaagagcaagaaa
ctcaaagagatctttcagaagacactggtagatccaggtccagacatggtcatctgcgat
gaaggtcacatcttgaagaacgaggcatctgctgtgtccaaagcgatgaattctatcagg
acgaggaggaggattgtgctgactggaacgcctcttcaaaataaccttgttgaatatcac
tgcatggtgaacttcatcaaggagaacttgcttgggtctgttaaggagttcaggaatcgc
ttcataaaccccattcagaacggtcagtgtgccgactccaccctacaagatgtcaggatc
atgaagaagagggctcacatcctctatgagatgctggccggctgtgtccagaggaaagat
tacactgcgctcactaagttcctgccacctaaacacgagtatgtgttgtcgatcagagtg
actccgattcagtgtaaactctaccggtactacctggagcacttcacaggtgtgggaaat
gctatggaggggggccggggccgcgcagggaccaaactcttccaggatttccaggtgctc
agcagaatctggacccatccctggtgccttcagctggactacatcagtaaagaaaacagg
ggtttctttgacgaggacagtatggacgagttcatcgcttcagaaacggaagaatcgtcc
atgagtatgacctctgaggacgagaaggccaaaaagaaaaagaagctagggaggggaaaa
aagagaggctctgatgactcggacagtgatgaagtggaagtcatcaaggagtggaacacc
tgcactaggggcaaaaacggagagagtcgaagcagaccagaacttgtagaagaacctcgg
gctgctagctcgacaccaggtagtcccggtcatgactggcacaaggagtttgtcgttgat
gctgacgccgagatcctgcagcactccggaaagatgatgctcctgtttgagatcctgcgc
atggcagaggaagtggatgaaaaagtgctggtgttcagtcagtctctcatctctctggac
ctgatcgaggatttcctggagctgtcttgcagagctaaagatgatgaaaaagtctctcca
tacaaaggtgaaggcaagtggttcaggaatattgactactatcgtctggatggctccacc
aacgccaccaccaggaagaagtgggctgaagagtttaatgacaccagtaacataagaggt
cgtttgttcctaatttcaacaagagccggctctcttggtatcaacctggtggcagccaac
agggtaatcatctttgacgcctcctggaacccctcctacgacgtccagagtatcttccgg
gtctaccgttttggccagattaggaccgtttttgtgtacaggttcctggctcagggtaca
atggaggcgaagatttatgaccggcaggtaaccaaacagtctctggcattccgggtggtg
gaccagcagcagattgagaggcactttacaggtgtagagctggcagagctctacaccttt
gagccggaaatgctggatgatccctcagcgaagaagagcaagaaagctacacccgtgctc
cccaaggataccttcctggccgagatgctgcagaataataaggaccagattgtgtgttac
catgaacacgactccctgctggaccacaaggaggaggaagccctgagcgaggaggatcgc
aaggctgcctggaccgagtatgaagcagagaaaaagggtgtgttcatgaggaacaactac
cagtcagcatacccccaaatggacatgggcaactccaactacttctccttcaacatggcg
gctttggcctccatgaccaaccagcagctggaggaccttataaaccagggacgacagaaa
gtcattgaagcaacaaatgcactgaagactctggcacgggagtcactggaagatgccatc
gccagactgtggaaggagaacccagcactcacagagagtcaggtccagtccatggctctg
ggtcaacaggccactctggaggcggagatcaagctcagggaagccacgtaccgggacgtc
ttgaccaggcagcagacgctgatgatgtacgtgcagaagctgatcaccaacaggaaggtg
caggagcagcagctggccatggctaaccaggccagctacctgaaccagctggccatgcag
aacggcatgatgggaggtggcgggcttagtcagatggacctggtggggctttaccagcag
ctccacggcctgggaggcatgggcaagaatcctgggccctccaagggcctgtag
DBGET
integrated database retrieval system
