Cyclopterus lumpus (lumpfish): 117737303
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Entry
117737303 CDS
T09199
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RNF12-A
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117737303 (rlim)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117737303 (rlim)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117737303 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
117737303
NCBI-ProteinID:
XP_034399039
Ensembl:
ENSCLMG00005018935
LinkDB
All DBs
Position
10:complement(10629252..10639025)
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AA seq
806 aa
AA seq
DB search
MEGSDSLEQSGSDQPESQRRRQLDRLDREEAFYQFVNNLSDDDYRLMRDNNLLGTPGEVT
EDELFSRLQQIKDGPEQQNNSTTAPSTESVEDPVEPPENSEDPANGDSLLDWLNTVRRTG
NTTRTGHRGNQSWRAVSQTNPNSGDFRFSLEISVNRNLAEQQAAAEGEQESQESPEGQEV
VANADPLVANADALVANADALVANADALVATADALVATADALVASAEPLVSSAEPLVSSA
EPVVSRAEPLVSRAEPLVSRAEPLVFRAEPLVSRAEPLVSRAEPLVSRAEPLVSRAEPLV
SIAQPLVSTGSAMVSLAEPQVAIAEPQVTIAEPQVTIAEPHVFIAEPQVPMETEVVEEPV
VEELAVIVEPEPELEEVVSQEIFGEPPRSPVALSVQPPLSPSPRRGQRRARSRSPEPRRT
RARTARSRSPLNLDQQDGFRNPNNAHSSQGLNSATNTPLEPQVEGSSRTRQHVLSRQSTA
DTEVQPSRAGAETVPEAQNMGSQEGEAAGGEVGAAGRRPPTIMLDLQVRRVRPGEYRQRD
SIASRTRSRSQNSNNTFLYESERGGFRRTFSRSERAGVRTYVSTIRIPIRRISDAGLGEA
TSMALQSMIRQIMTGFGELGYLMDSDSDSSDSNRGVSTPADLAESLNNPDVAPVAAPVAD
VDEPPVAAGVRVRTAESDIDEGLATAPPPSGGRARPRPPISLEEPSSLPFLRLAHFFLLN
DDDEDQPQGLTKEQIDNLSMRNFGESDALKTCSVCITEYAEGNKLRKLPCSHEYHVHCID
RWLSENSTCPICRRAVLVSANRESVV
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggaagggtctgacagtttagagcagagtggcagtgaccagccagagtcccagcgcagg
aggcagctggaccgcttggacagggaggaggccttctaccagtttgtcaacaatctaagt
gatgatgactatcgtctcatgagagacaacaatcttttgggcaccccaggagaggtcaca
gaagatgagctgtttagtagacttcagcaaataaaggatggtccagaacagcagaataac
agtactactgcccccagcaccgaaagtgtagaagatccagttgaaccaccagaaaactct
gaggatcctgccaatggggatagtctcttagactggctgaacacagtaaggcgcacaggc
aacacaactagaactggtcatcgtggaaaccagtcgtggcgggccgtaagccagaccaac
ccaaacagtggcgattttcgcttcagcctggaaatcagtgtgaatcgtaacctggctgaa
cagcaggcagctgctgaaggggagcaggagtctcaagagtctccagagggccaagaagtg
gtggcgaatgctgatccactggtggcgaatgcggatgcactggtggcgaatgcagatgca
ctggtggcgaatgcggatgcactggtggcgactgctgatgcactggtggcgactgcggat
gcactggtggcgagtgctgaaccgttggtgtctagtgctgaaccgctggtgtccagtgct
gaaccggtggtgtcacgtgctgaaccgctggtgtcacgtgctgaaccgctggtgtcccgt
gctgaaccactggtgttccgtgctgaaccgctggtgtcccgtgctgagccactggtatcc
cgtgctgagccactggtgtcccgtgctgaaccactagtgtcccgtgctgaaccactagtg
tccattgctcagcctctggtgtccactggctcagcaatggtgtcccttgctgagccacag
gtggccattgctgagccacaggtgaccattgctgagccacaggtgaccattgctgagcca
catgtgtttattgctgagccacaggtgcccatggagacggaagtggtggaagaaccagtt
gtagaggaattggctgtcatagtggaaccagagcctgaattagaagaagttgtttcacaa
gagatttttggagaaccacccaggtcacctgtcgccctatcggtacagccaccactttct
ccttctccacgcagaggacaaaggagagctcgcagccgtagtccagaaccacgcaggact
agagcccgtactgccaggagccgctcccctctcaacctggatcagcaggatggttttcgt
aatccaaataatgctcacagctctcaaggcctcaactctgccaccaatacaccccttgag
cctcaagtggagggcagttcccggactcgacaacatgttctttctaggcaaagcactgct
gacactgaggttcagccatctagggctggtgcagaaacggtcccagaggcccaaaatatg
ggatctcaggaaggagaagctgctgggggcgaagtgggcgcagcagggcgccgcccccct
actattatgcttgatcttcaggtgcgccgtgtgcgtccaggcgaatatcgtcagagagac
agcattgctagccgaacccgctcgcgctcccagaactcaaacaacacatttctttatgag
agtgagcgtggtggatttcgtaggactttctctcgctccgagcgtgctggtgtaaggacc
tacgtcagcactattcgcatccctatccgaagaatctctgatgcaggtttgggagaggca
acctcaatggctctccaatctatgattaggcagataatgactggttttggtgaactcggc
tacctcatggattcagactctgattcttcagattcaaaccgtggagttagcacacctgca
gatctggctgaatccctcaacaacccagatgttgctcctgttgctgctcctgttgctgat
gttgatgaaccacctgtggctgcaggagtcagggtaaggacagctgaatctgatattgat
gagggccttgctactgcgccacctccctctgggggcagggctcggcctagaccacctatc
agcctggaggagcccagctcactgcccttcctgcggcttgcccacttcttcctcctaaat
gatgacgacgaggaccagccccaagggctgaccaaggagcagattgacaacctctcaatg
cgcaactttggtgaaagtgatgccttgaagacttgcagtgtatgcattacagaatatgca
gaaggtaacaagctacgtaagctgccctgctctcacgagtatcatgtgcactgcattgat
cgctggctctccgaaaactcaacttgtcccatctgccgcagggctgtcttggtatcggcc
aaccgggagagtgtggtgtag
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