Cyclopterus lumpus (lumpfish): 117737454
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Entry
117737454 CDS
T09199
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117737454 (ssrp1a)
03036 Chromosome and associated proteins [BR:
clum03036
]
117737454 (ssrp1a)
Transcription factors [BR:
clum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
117737454 (ssrp1a)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
117737454 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
YABBY
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
117737454
NCBI-ProteinID:
XP_034399324
Ensembl:
ENSCLMG00005010115
LinkDB
All DBs
Position
10:13751680..13763584
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AA seq
718 aa
AA seq
DB search
MGDTLEFNDIYQEFKGSWNDGRLRFGKQNVVYKSSKTGKVDSIPAGELNLAQWRRVCLGH
GIKLATNSGHVHKYDGFRDTDFEKISEFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLS
FEVNDSTAFEVPLSNVSQCATGKNEVTLEFHQNDDTDVSLMEVRFYVPPAQADERQDPVE
AFADNVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDLSLTLNMSEEDVERRFE
GKLSKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGVQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISSVNFARGTTTTRSFDFEIETKQGNQFTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEKKGMKGKIDEYSDSDEDQHDAYLERMKAEGKIREEGNESEESDGESD
ESFNPGEEDDDIAEEYDSNASASDSSEDGDDSDNDGSKKKVKKPKVVKEKKERKPRKEKK
PREGPKRPMSAYMLWLNASRERIKSENPGISITEISKKAGEMWRQLGKDDKEEWDTKAAE
AKRQYDKAKKEYKDSVASGVGGASSGGGGATSSSKKESKKSGGKKDEKKRKSAGGDKEKE
RGGGNDSFKSREFIETSEDSSSDTDRKSKSKKKKKKKESDEEKEEAVSTPASSEADSD
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgctggagttcaacgacatttaccaggagttcaaaggctcgtggaatgat
gggcggctgcgtttcggcaaacaaaatgtggtttataagagcagcaaaacggggaaggtg
gacagcatccctgctggagagctcaacctcgcccagtggaggcgagtgtgtttaggtcac
ggaatcaaactggccaccaactcgggacatgtccacaaatatgacggcttcagggacacg
gactttgagaagatctctgagtttttcaaggctaactacaaggtggagctgacggagaag
gacatgtgtgtgaagggatggaactggggaacagccaagttctcaggaccactgttatca
tttgaagtaaatgacagtacagctttcgaggtcccactgtccaacgtgtcccaatgcgca
acggggaagaacgaagtcactctggagtttcaccagaacgacgacactgatgtctccctc
atggaggtccgattctacgtccctcccgcccaggctgatgaacgacaagaccctgtggag
gcatttgcagataatgtgttgtcgaaggctgatgtgatccaggccacaggagacgctgtg
tgtatcttcaaagagctgcagtgtcttacgcccagaggaagatacgacatccgtatctac
ccgactttccttcacctccatggtaagacgtttgactacaagattccctacaccaccgtc
ctccgtctattcctgctgccgcacaaggatcagaggcagatgttctttgtgataagtctg
gatcctcccattaagcagggtcagacgcgttatcacttcctcatcctgcttttctccaag
gaagaggatctcagcctcaccctcaacatgagcgaggaggacgtggagcgccgttttgag
ggcaaactcagtaaaaacatgtcagggtctttgtacgagatggtcagcagggtgatgaag
gccctggtcaaccgcaagatcactgtgcccggaaacttccagggtcactctggggttcag
tgcattacctgctcctacaaggcgtcctcgggcctcctctatcctctggagaggggcttc
atctatgtccacaagccccccgtgcatttgcgcttcgaggagatctcctctgtcaacttc
gcccgaggcaccaccacaacgcgatcctttgactttgagatcgagaccaagcagggaaat
cagttcaccttcagcagcattgagagagaagagtacggcaaactgtttgactttgttaac
gccaagaagctcaacatcaagaacagaggattcaaagagaagaagggcatgaagggtaaa
attgacgagtacagtgactcagacgaggaccagcatgatgcctacctggagaggatgaag
gctgagggcaagatcagagaggagggcaacgaaagcgaagaatcggacggcgaaagcgat
gagtcgtttaaccccggagaagaagatgatgatattgcagaagagtacgacagcaatgcg
tcggcgagcgacagcagcgaagacggggacgatagcgacaatgatggctcaaagaagaag
gtcaagaaacccaaagtggtcaaggagaaaaaagaaaggaaaccacgtaaagagaaaaag
ccgagagaaggacccaagaggccgatgagcgcctacatgttgtggctgaatgccagccgc
gagcgcatcaagtctgagaaccccggcatctccatcacagagatttccaagaaggctgga
gagatgtggagacaactgggcaaagacgacaaggaggagtgggacacaaaggcggcagag
gcgaagaggcagtatgacaaagcaaagaaagagtacaaagatagcgtcgccagtggcgtt
ggcggtgccagtagtggcggtggcggagcaacatcaagttccaagaaggagagtaaaaaa
tctggaggtaagaaggacgagaagaagaggaagtctgctggaggagacaaggaaaaggag
cggggaggaggcaacgacagctttaagagtcgagagttcatcgagacgagcgaggacagt
tcgtcagacactgaccgcaagagcaagtccaagaagaagaagaagaagaaggaatcggat
gaagagaaggaagaggctgtgtccacacctgccagctcagaggcagactctgactaa
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