Cyclopterus lumpus (lumpfish): 117737568
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Entry
117737568 CDS
T09199
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117737568 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clum01009
]
117737568 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117737568 (pcdh11)
Protein phosphatases and associated proteins [BR:
clum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117737568 (pcdh11)
Cell adhesion molecules [BR:
clum04515
]
Cadherins
Protocadherins
117737568 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
117737568
NCBI-ProteinID:
XP_034399506
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All DBs
Position
10:complement(14170431..14286506)
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AA seq
1267 aa
AA seq
DB search
MDLLSQAPVLVVLLTCGVLLCQAQERDYTVKEEQPENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCAGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPVFKDSELEVTVPENAPVGTSVAQLHASDADLGSNALIHFAFSNQISASTKRHF
AIDSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVIVNVTDINDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLFGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGRNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
IARDNGSASLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDTDAG
DNAIITLSVLNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGAVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFAIDKTTGNITLQEKVVAADQGLHRLVVKVKDLGQPESLQAIALIHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQDNRQIKKKKKRKKRSPKSLLLNFVTIDESKPDDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTAGQITTRQNLSQ
TLEKSFNSPLPICPHKETCQLGKITSVNTQRRVTFHLPDGSQESCSDSGLGDPEPSSTAS
TTQPLPLNFPQEEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGH
SDSCWMPPALAQFQGPGSNSPTSTPIPTAITGTMSSFGFQQSCARGAKANMVSMGVMDGR
HTLGRSVPKKDELDKGINRPQFYNTLDRHCSKKEDPFKVIPLASFSSPGQQTPTGGGSSS
FLHEHQL
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggacttattaagtcaggctcctgtgctggtggtcttgctcacctgtggggtcttgcta
tgtcaggcccaggagagggactacacggtgaaggaggagcagcctgagaacgtccgcatt
gggaacctgcgcaaggacctggacctcaacctggaccccaacatcaggttgtcctcaccg
ctgcagttcaagcctgtgtacaagacgggtgacgtgcctttggtgagggtggaggcaaac
acaggggagatctttaccaccaatcacagaattgaccgggagaagctgtgcgccggggtc
ttcgctgagaaacgctgttattatgagatcgaggtggccgtgctgccggatgagatcttc
cgattggtaaagatccgcttcctgattgaggatgtaaacgacaacgcgccccttttccag
tccactgtaataaacatctccatcccggagaacacagccatcaacactcgatacccggtg
ccctcagcatttgaccctgatgtaggaatcaatgggatccaacattatgaactggtcaag
agtgtcagcgagtttggcttagacatcatagagactcctgaaggggacaagtggccgcag
cttatcgttcagcagaacctggatcgcgagcagaaggacacctttgtgatgaagataaag
gtagaagatggtggcaaccctcccaagtccagcaccgccatcctccaagtcaccatttcc
gatgtcaatgacaaccgtcccgtcttcaaggacagtgagctggaggtcacagtgccggag
aatgcccccgtggggacatcggttgctcagcttcatgcctcggacgcagacctgggttcc
aacgcactgatccactttgccttcagcaaccagatctctgcctcaaccaaacgtcacttt
gccattgacagctctacaggactgatcacggtgaagcagccactggacagggaggtaact
ccagttcacaaactcatcgtccttgccagtgacggcagctccaccccctccagagccaca
gtgattgttaatgtaacagacattaatgacaatgttccctccatagacactcgctacatt
atcaacctggttaatgggactgttctgctgtctgagaatgctcctctcaacaccaaaata
gctctcatcactgttactgacaaggatgcagatctttttggtaaagtagcttgctacact
gaccatgatgttccttttcgattgaagcctgtctttaatgaccaatttttactagagaca
gctgcccccctagattatgagacgactcgagaatatgcaattaagatagtggcctcggat
agggggacgcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaac
gacaatgcacccatcttcccccagccggaaatccaactttccataccggagaacaatgac
ccttctacgcagttaataaaaatcagcgccactgacgctgacagtggacgtaatgctgag
attatttatactcttggccctgatgcgcctgacgggtttaacatagacagacggtcagga
attctctccgttggcaaacgactggacagagagaagcaagagaggtactcattcactgtc
atagcgagggacaatggctctgcgtccctgcagagcaatgtcactgtcaggctaatcgtc
caggaccttaatgacaacagcccagctttcacacaccctgagtacaacttttatgtgcct
gagaacctgcctctctatgggactgtgggcttaatcacagtgacggacacagatgcggga
gataatgcgattataacactgtccgttttgaacgggaaagataatttcatcatcgacccc
caaaccggtgtgatcaaacccaatatcacctttgatagggagcagcaaagctcttacacc
tttatggtcaaggcagttgatggagggcaacctccgagctcctcctatgccaaggtcaca
atcaatgtggtagatgtgaacgacaatcgccctgtgttcgtcatcccatcctccaattac
tcatatgacctagtgcgaaccaccaccacccctggtgctgtggtcaccagagtgtttgcc
attgacaatgacacaggtatgaatgctgagctgcagtacagcattatcagcagcatcatc
atcacatctagggtctcccccagaggtctctttgccatcgacaagacaacgggtaacata
acactgcaggagaaagtagtggcagctgatcaggggttgcataggctggtagtcaaagtc
aaagatctgggtcagcccgagtcattacaagctatcgcacttattcacttgtttgtcaat
gacactgtgtcaaacgctacctttatccaagagcagctgcgaaaaagtatggagacaccc
ttggatcgtaacataggggacagtgaggtaacacctcaagccaatggatatgtgattgtt
gtcatagcaatcatagcagggaccatgactgtcatcttggtgatatttgtgactgccttg
gtgcgctgccgacagacacccagacacaaagtggtacagaagggcaagcagagtggcgag
tgggtgtcacccaaccaagacaaccgtcagatcaagaagaaaaagaagagaaagaagcga
tcccccaagagcctcctcttgaactttgtgaccatcgatgaatccaagcctgacgacccc
acccatgagcatgttaatggcacactggatctccctgtggagttagaggagcaaaccatg
gggaagtacaactgggccacaacgcccaccaccttcaaacctgacagccccgatttagcc
aagcattacaagtctgcgtcccctcagcctacatttcaaatcaaaccggagactccagtg
gctccaaagaaacaccatgtgatccaggaactccccttggacaacacgttcgtggtgggc
tgtgactcactctccaagtgctcatcgactagctccgacccgtacagtgtctcagagtgc
agctgtcaggggggattcaagactgcggggcaaatcaccacccgacagaacctgagccag
acactggagaagtctttcaactcaccgctccccatttgtcctcataaggagacctgtcaa
cttggcaagataacctctgtgaatacccagcgccgcgtgacgttccatcttccagatggt
tcccaggagagttgcagtgacagcgggctgggagacccggagccgagcagcacagccagc
accacccaacctcttcccctcaacttcccccaggaggagtactatgagcaaacatcacca
aacagccgcactgagggagatggaaactcagaccctgaatcaactatcgaggtgaacctt
cagaaagccttggctgaggcctctgagacctgcacccaggagtgtctgatactgggccac
tccgacagctgctggatgcccccagccctggcccagttccagggtcctggcagtaacagc
cccacctccacccctatccccaccgccatcaccggtacaatgtcctcttttggcttccag
cagagctgcgcccggggagccaaagctaacatggtcagcatgggggtcatggatggccgc
cataccctgggcaggtctgtgcccaaaaaagatgaactggacaaagggatcaaccggccg
cagttctacaacaccctggatagacattgcagtaagaaagaggaccccttcaaggtcatc
cccctggcgagcttctcctctcctgggcagcagacgcccaccggagggggcagcagctct
ttcttgcatgagcaccagttgtaa
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