Cyclopterus lumpus (lumpfish): 117737592
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Entry
117737592 CDS
T09199
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum02010
ABC transporters
clum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117737592
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117737592
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
clum02000
]
117737592
Transporters [BR:
clum02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117737592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
117737592
NCBI-ProteinID:
XP_034399537
Ensembl:
ENSCLMG00005006332
LinkDB
All DBs
Position
10:23971627..24037118
Genome browser
AA seq
2291 aa
AA seq
DB search
MSVSTQLGLLLWKNFTFRRRQTLQLLVEIIWPLLIFFILIAVRLSYPPYEQHECHFPNKA
MPSAGTLPWLQGILCNANNPCFRSPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
NLDGFKELAMALKVLQKSRSGFKLHHFLRDKEVLSEFLLRNASLSQHDVQQIRDADVDLE
QVLLRGFGVHLRDMCPSKGGKRSVEDFVTIADQRVSMLVQEVLCRETPIWLDRAEDHFLK
NLDFLKPIQRDLRSDPEAVKLVARATNNLLDSLGSLAVELAGMKSWIDLRTEIVFLTQNA
TSSPSTMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNQNSSEDESTSLYDNSST
PYCNSLVKNMDSNPMSRMIWQALKPLLIGKILYTPHTPATQRVIHEVNRTFQELGVFRDL
GGMWEEMRPKAWNFMENGEQVDVIRTLLKNNATARLFHAQLTHTDWTVDDISNFLSKQAT
PTHSGLTWREVFNETDQAIMSISRFMECVNLDKLEPVSSEEQMVNQSMVLLEDRKFWAGI
VFPDVDPNATELPAKLNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFSYL
QDVIEQGIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRVISRSMPLFMTLAWMYSVAIIL
KSVVYEKEARLKETMRIMGLNNGILWFSWFISSLIPLLVSAGLLVVLLKKGNLLPYSDPG
VVFLFLGSFAVVTIMQCFLLSTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGFGGK
VFASLLSPVAFGFGCEYFALFEEQGVGIQWKNLVSSPLEEDDFSLRTAIVMMYLDSFLYG
VLTWYIEAVFPGQYGIPRLWYFPFTKAYWFGDKEGKSNKVPLSRKENPEAVCIEEEPAHL
EPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGRDIRTELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQI
LQDTGLPHKRNSRSSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPFARRGIWDLLL
KYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKREPE
PSLSSCRNSSSTVSFTKKEEESTSVSSSDAGLGSDHESEAATIETGPAASVCSAAFVPPD
VSLVSGLILGHVPAARLVEDLGHELTYVLPYSAAKEGAFVELFKDLDLQLPELGISSYGV
SDTTLEEIFLKVAEDNGVDTEVPSDGTLPVRRRRRTHAFGGGDHQSCLRPLTEDDNDCNE
SEGDPECRETDWLNCTDGKGSYQVKGWSLKRQQFVALMWKRFLHARRSRKGFFAQIVLPA
VFVCIALVFSLIVPPFGKYPSLELQPWMYEDQVTFISDDAPGDANMQKLLSALLDAPGLG
TRCMDGHPIPEAPCTMGDEDWQTPDVPESLQQLFRSTNWTMEDPSPACFCSCDDKKKMLP
DCPAGAGGLPPPEMKLSANDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYGGF
SLGARSTQVLPPANEIDDAIERVRKIFELQKGAAADRFLDSLSGFINGLDTKNNVKIWFN
NKGWHSIGAFINVMNNGILRANLPEGKDPNLYGIRAFNHPLNLTKEQLSQVALVTTSVDV
LVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPLLYWVANFIWDMCNYIVPAT
LVIVIFICFQQQAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFQIPSTAYVVLTSVNI
LIGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERF
GENRLRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFFIKPRSVSKLTKLGPLGEEDE
DVARERQRIVHGLGHGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKT
TTFKMLTGDTLVTSGEAFLAGKSILREMSSVHLNMGYCPQFDSINELLTGREHLELYAVL
RGVPEQEVCEVAEWGIRKLGLMKYAEKAAGSYSGGNMRKLSTAMSLIGAPPVVFLDEPTT
GMDPKARRALWNCVHSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN
RFGDGYTIILRVGGPDADLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLTHIFSI
LAKNKDLLRIEDYSVTQTTLDQVFVNFAKDQSDDYHSKDSVRRRDVAIEVLAPSESRGAA
EGAGALKESVM
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtctccacccagctgggcctgttgctgtggaagaacttcaccttcagacggcgg
cagacgctccagctcctggtggagatcatctggccgctcctcatcttcttcatcctcatc
gccgtgcggctcagctaccctccatacgagcagcatgagtgtcatttccccaacaaggcg
atgccatcggccggcacgctgccgtggcttcagggcatcctctgcaacgccaacaacccg
tgcttcaggagcccgacgccgggcgagtctccgggcgtcgtcggcaacttcaacgactcc
ataatttctcgtctgttttcggacgccaagaagattcttctgtacagtcagaacgataaa
aacctggatggatttaaggagctcgctatggctctcaaggtgctgcagaagagccgatca
ggattcaagctgcaccacttcctgcgagacaaggaggttctgtcggagttcctgctgagg
aacgcctcgctgtctcaacacgacgtccagcagatccgagacgccgacgtggacctggag
caggtcctcctgagaggtttcggtgtccacctgagggacatgtgtcccagcaaggggggc
aagcggagcgtggaggactttgtgacgattgcggaccaacgggtgtcgatgctggtccag
gaagtcctctgccgggaaacgcccatctggctggaccgcgccgaggaccacttcctgaag
aacctagacttcctgaaacccatccagagggacttgaggtccgacccagaggccgtcaaa
ctggtggccagagcgaccaacaacctcctggacagtctgggttcactggcagtcgagctg
gctgggatgaagagctggatcgacttgaggacggagatcgtgttcctgacccagaacgcc
acgtcgtcccccagcaccatgtaccaggccgtctcccggatcgtctgcggtcaccctgaa
ggcggcggcctgcagatcaagtccctcaactggtacgaggacagcaactacaaggccctg
ttcgggaaccagaacagcagcgaggacgagtccacgtcgctgtacgacaactcgtccacg
ccgtactgtaacagtctggtgaagaacatggactccaacccgatgtcccggatgatctgg
caggccctgaagccgctgctgattgggaagatcctgtacaccccccacacccccgccacc
cagagggtcatccacgaggtaaaccggaccttccaggagctcggtgtgttcagggacctg
ggcggtatgtgggaggagatgagacccaaagcctggaacttcatggagaacggcgagcag
gtggacgtgatccggactctgctgaagaacaacgccaccgccagattgttccacgcccag
ctgacccacaccgattggaccgtggacgacatctccaacttcctgtccaagcaggcgacc
ccgacccacagcgggctcacctggagggaggtgttcaacgagaccgaccaggccatcatg
agcatctcccgcttcatggagtgtgtaaacctggacaaactggagccggtctccagcgag
gagcaaatggtcaaccagtccatggtgctgctggaggacaggaagttctgggcggggatc
gtgttcccggatgtcgacccaaacgccaccgagctgccggccaaactcaactacaagatc
cgcatggacatcgacaacgtggagaggaccaataagatcaaagacgcgtactgggacccg
ggtccccgtgccgacccatttgaggacatgcggtacatctggggcgggttctcgtacctg
caggacgttattgagcaaggcatcattcgagcagtgacgggcaccaaggagaagacgggt
gtctacatccagcagatgccttacccctgctacgtggacgacatcttcctgcgggtgata
agccgctccatgcctctcttcatgactctggcgtggatgtactcggtggcgatcatcctg
aagagcgttgtgtacgagaaggaggctcgtctgaaggagaccatgaggatcatgggcctg
aacaacggcatcctgtggttcagctggttcatcagcagcctgattcctctgctggtcagc
gccggcctgctggtggtgctgctgaagaaggggaacctgctgccctacagcgaccccggc
gtggtcttcctgttcctgggctccttcgcggtggtgaccatcatgcagtgcttcctcctc
agcacggcgttcgcccgcgctaacctggccgccgcctgcggaggcatcatctacttcacg
ctctatctgccctacgtgctgtgcgtggcctggcaggactacatcggcttcgggggcaaa
gtcttcgctagcctcctgtcccccgtggcgttcgggttcggctgcgagtactttgccctg
tttgaggagcagggagtcggtatccagtggaagaacctggtgtccagccctctggaggag
gacgacttcagcctgcgcaccgccatcgtcatgatgtacctggactccttcctgtacgga
gtcctcacctggtacatcgaggctgtgttcccaggtcagtacgggatccctcgactgtgg
tatttccccttcaccaaggcctactggttcggagacaaagaagggaagtccaacaaagtc
cccctgagccggaaggagaacccagaagcggtgtgcatcgaggaggagccggctcacctg
gagcccggagtctacatcgagaacctggtgaaggtctaccggcacgggaagaagctggcg
gtggacggactgacgctcggcttctacgagggacaaatcacctcgttcctgggacacaac
ggagccgggaaaaccaccaccatgtccatcctgaccggtctgttcccccccacctctggc
actgcctacatcctgggcagagacatccggactgagctgagtgccatcagacagagtctg
ggagtctgccctcaacacaatgtcctcttcagcatgctgacggtagaggagcacatctgg
ttctacggccggctcaaaggcctgtcggagcagcaggtgaaaggcgagatcgagcagatc
ctgcaggacacggggctgccgcacaaacgcaactccaggtccagcgcgctgtccggcggc
atgcagaggaagctgtctgtggcgctggccttcgtcggggggtcgaaagtcgtgatcctg
gacgagcccacggccggcgtggacccctttgcccgcagagggatctgggacctgctgctg
aagtaccggcagggtcggaccatcatcctgtccacgcaccacatggacgaggcggacatc
ctgggagaccggatcgccatcatctcccacgggaagctgtgctgcgtgggctcgtccctg
tacctgaagaaccagctggggacgggctactacctgacgctggtgaagagggagccggag
ccgtccctcagctcctgcaggaactcgtccagcaccgtgtccttcaccaagaaggaggag
gagagtacttcggtcagcagcagtgacgccggcctcggcagcgatcatgaaagtgaggct
gcgactatcgaaactggtccggcggcgtccgtctgcagcgccgccttcgtgccccctgac
gtgtccctggtctcgggtctgattctgggccacgtccccgccgcacgcctggtggaggac
ctgggacacgagctgacctacgtcctcccgtacagcgccgccaaggaaggggccttcgtg
gagctcttcaaagacctggacctccagctgcccgaactcggcatctccagctacggggtg
tcggacaccacgctggaggagattttcctgaaagtggctgaagacaacggagtcgacact
gaagtgccttcagatggtacacttcctgtccgaaggcggaggaggactcacgccttcggt
ggaggagaccatcagagctgtctgagacctttaacagaggacgacaacgactgcaacgag
tctgaaggagatcccgagtgccgggagacggactggttgaactgtactgacggtaaaggg
tcgtatcaggtgaaaggttggagtctgaagaggcagcagtttgtagctctgatgtggaaa
cgatttctgcacgctcgacgctccaggaaaggcttcttcgctcagattgtccttcctgct
gtgtttgtgtgtatcgctctggtcttcagtctcatcgtcccccctttcggaaaatatccc
agtctggagctgcagccgtggatgtacgaggaccaggtcaccttcatcagtgatgacgcg
cccggagacgccaacatgcagaagttgttgagcgctctgctggacgcaccgggcctcggg
actcgctgcatggacggacatcccatcccagaggctccctgtacgatgggggacgaggac
tggcagactcccgatgtccctgaaagcctccagcagctgttcaggtccacgaactggacc
atggaggacccgtctccggcctgtttctgcagctgcgacgacaagaagaagatgctgccg
gactgtccggccggagccggaggactgcccccccctgagatgaagctgagcgccaacgac
acactgcagaacctcacgggaagaaacatctcagactacctggtgaaaacatacgctcag
atcatcggcaagagtctgaagaacaaagtttgggtgaacgagttcaggtacggaggcttc
tcattgggcgccaggagcactcaggtcctcccaccagccaatgagatcgatgacgctatc
gagcgagtcaggaagatctttgagctccagaagggagcggccgcagatcgtttcctcgac
agtctgtcgggcttcatcaacggtttggacacaaagaacaacgtgaagatctggttcaac
aacaaaggctggcacagcatcggggccttcatcaacgtgatgaacaacggcatcctgaga
gcgaacctgcctgaagggaaagaccccaacctgtacggcatcagggccttcaaccaccct
ctgaacctcaccaaggagcagctgtcacaggtggctctggtcacaacctctgtggacgtc
ctcgtgtccatctgtgtgatcttcgccatgtccttcgtcccggccagcttcgtggtcttc
ctcatccaggagcgagtcaataaagccaaacacatgcagttcatcagcggagtgcagccg
ctgctctactgggtggccaacttcatctgggacatgtgtaactacatcgtcccggctacg
ctggtcatcgtcatcttcatctgtttccaacaacaagcctacgtgtcgtccaccaacctg
ccggtgctcgctctgctgctgctgctctacggctggtccatcactcctctgatgtacccg
gcctccttcttcttccagatccccagcacggcctacgtcgtcctcaccagcgtcaacatc
ctcatcggcatcaacggcagcatctccaccttcgtcatggagctgttcggaaacaacgag
attggaggaatcaacgacatcttgaagaacgtcctgctcatcttccctcacttctgcctc
ggtcgaggactcatcgacatggtgaagaaccaggcaatggccgacgccctcgagagattt
ggtgagaacaggttacgctctcctctcgagtgggacatggtgggaaagaacctgttcgcc
atggctgtggagggagtggtgttcttcatcatcaccgttctcatccagtacaggttcttc
atcaaacccaggtcggtcagtaaactcaccaaactgggaccactgggagaggaggacgag
gacgtggcccgagagagacagaggatcgtccacggcctgggacacggagacatcctggag
ctgcgacagctcaccaaggtgtttaaacggaaacagaagccggcggtggatcgactgtgt
gttgggattccacctggagagtgcttcgggctgctcggggtgaacggagctggaaagacg
acgaccttcaagatgctgacgggggacacgctggtgaccagtggagaggccttcttggct
gggaagagcatcctgagggagatgtcctccgtccacctcaacatgggttactgtcctcag
tttgactccatcaacgagctgctgacaggaagagaacacctggagctgtacgccgtcctc
agaggagtcccggagcaggaagtctgtgaggtggcagagtggggcatcaggaagttgggt
ctgatgaaatacgctgagaaagcagcaggaagttacagcggaggaaacatgaggaagctt
tctacggccatgtctctgatcggagcgccgcccgtcgtgttcctggacgagcccaccact
ggcatggaccccaaagcccggcgggccctctggaactgtgtccacagcatcatcaaggag
ggacgctcggttgtcctcacctctcacagtatggaggagtgtgaggctctgtgcaccagg
atggccatcatggtgaacggcaggttcagatgcctcggcagcgtccagcacctgaagaac
aggtttggggacggctacaccatcatcctgcgggtgggggggccggacgccgacctgctg
cccgtcatgaagttcatcgagagcgagctgagcggcagcacgctgaaggagaagcaccgc
aacatgctgcagtaccagctgccctcgtccctcacctccctcacgcacatcttctccatc
ctcgccaagaacaaggacctgctgaggatcgaggactactccgtcacccagaccaccctg
gaccaggtgttcgtgaactttgcgaaggaccaaagtgacgactatcactccaaagactcg
gtgcggcgccgcgacgtcgccatcgaggttctcgcgccgagcgagagccgaggagccgcc
gagggggcgggcgcgctgaaggaaagcgtcatgtaa
DBGET
integrated database retrieval system
