Cyclopterus lumpus (lumpfish): 117737658
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Entry
117737658 CDS
T09199
Symbol
sh3tc2
Name
(RefSeq) LOW QUALITY PROTEIN: SH3 domain and tetratricopeptide repeat-containing protein 2
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117737658 (sh3tc2)
Membrane trafficking [BR:
clum04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
117737658 (sh3tc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_8
SH3_2
TPR_1
SH3_9
TPR_MalT
TPR_10
SH3_1
SNAP
TPR_7
CymA
Motif
Other DBs
NCBI-GeneID:
117737658
NCBI-ProteinID:
XP_034399637
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All DBs
Position
10:8427754..8441200
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AA seq
1553 aa
AA seq
DB search
MALISGSCQLLGQMASCCCRPLLNSCCCGPFLKVCLSSFTDISPAELDALWREPPYTLGG
ANEHFSGNDIMTQGAGEEDDGPVEEPGEGGVEPDNHWKKKEALRGSTMSLGDKFSSEIEL
LFTGRRRSSEQPDQVLQEALRTRLRVVESNSQDVIQLFKDLSARLVSVHAEKVNFVLTFK
TVEEVWKFSTYLALGYVARCLENFLCDQSFWLDPELLSDLQINVAVDEERLATLYLGLLL
QEGSFFAKALFTRSDQDEDNEEQLSFKKNELLMVKDTGQDSMWEGTMLSTGSHGLVPVNA
MQPLPYPFYQWFLRNYPGNAGCSPAETEPFEHAIVTGSCVAVVDHSPVDPDELPLSQGDI
VEIQGLLIRGLDVFIATHSCTGHTGFIHKAHVKPLDTIPLRLVFLTEEERASLAQVNPCS
SEPSDSGLLERLFSSDISSVYRLDRLDETDFLYIRNRPKHDHKVPASTRQSVVSDKSAGT
PPYHSSPRTSLSYSSPRLSLYQSLNPLPREGERLSLILDDTFREMDEFQEDPPLFLEENS
WEGEDSEFSDPTLTLLNHERFQEDLLPLYDLQYSFLRVTFSGKTEDELLGHLESIRESAK
RMGLEWAHRRACFLLGRLCARKLKLSQARVYYEEALSVRVDSFSDTPLLVALYTNLTAIY
LKQRMTDKLPQTLEKAIALLLCLPCHTFTSTDEVELLQLLLRRSVVMGDKHLEARVCYLV
SSLFLLRRKTDDALPFVERLQFLSVTLSAAEGRPIVPLDLNWLLSWLYHRKYMPYLALAS
LSLDSRQDHSLHSAFRRIELFIRNSVRLNPCWNEGTSLLPAQIVIYLQQALIIAEQGEDL
KTQRDLCQSLATVYLQYDALDKAVLCAQQAVETGGHINEEEGFEASVLLGWLLVLTGEAE
RAQSVLQPLLTSLQGTDSPTQRGVIHNLLALCLRQQGCIPEAGRHLHSALVISRESGNQR
NQALALANLGCLALDVGAPLVAERFLVRSLHLFLELWESPIDEEHVQTYLWLGRSYKDRR
KSPDSRACYEMGLLIALHARNLHSRMVVAKVLSQVYADMLLYSQSIVYYEHCVSVCRELK
DKRLEGEYLEILSSLYLSLNTERSSRKSLDYTKQXLRISIDLGKREEESETWLQVGRIYY
LIQEDELADMYLQAAVKTALRMNDHHFAMSIYEEAGDVYFKGSRNRMASMPFYRDGALPF
ARSIKDIHSEFRLLSKLTELLMNQGEQEEALQYATLAVQIAGKTGVHVNERTAYHRLATV
YYNQQQYELAENYYLKSLSLCPPALQDPMEARYYTKVYSRLGNLTLHKLKDSFDAVGYFH
LALAAALEDQTNPEALYVVYMKLAEIHGNHMPDAQLCREYRDRAEGLKRVLAGEEEAAVE
EENMEDADVEPGQKKDEDPGADMERTESLLRQTACSFXPEKEKCEDNLLPRTGILHRDTE
DICTDTNIGDDHINRDADGSLVDALESETEIIGSKSHSDSILTESFDTAKEQISDSSSST
DTLQTHQNQADGKDFDTDTPSQSPDNHKSDITRRTVSDNHDEQHTPEETDVHA
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atggcattgatctctgggagctgccagctcctgggccagatggcgtcttgttgctgcaga
ccgctgctcaactcctgctgctgtggaccgttcctcaaagtctgcctctcctccttcaca
gacatctctcctgctgagctggatgctctttggagggaaccgccatatactcttggggga
gcaaatgaacacttctcgggaaatgacatcatgactcaaggtgcaggtgaggaggacgac
ggtccagtggaggagccaggtgaaggaggggtagagcctgacaaccactggaagaagaaa
gaggccttaagaggaagtactatgtccctgggagataaattctcctcagaaattgagctg
ctgttcaccggtcggaggcgctccagcgagcagcctgaccaggtcctgcaggaggcgctg
cgcacccgactccgagtggtggagagcaacagccaggacgtcatccagctcttcaaagac
ttgtccgcacgtctggtgtctgtgcacgctgagaaggtaaacttcgtactcacattcaag
accgtggaggaagtctggaagttttctacttacctagcgttaggttacgtggctcgctgc
ttggagaacttcctgtgtgatcagtccttctggctggacccagagctgctcagtgacctg
cagatcaatgtcgctgtggacgaggaacgactggccaccctctacctgggactgttactc
caggagggctccttcttcgctaaggcgctgttcacaagaagtgatcaggatgaggacaac
gaagagcagctgtcgttcaaaaagaatgaattgctgatggtgaaggacacagggcaggac
agcatgtgggagggcaccatgctctccacagggagccacggcctggtgccggtcaacgcc
atgcaaccgctgccgtaccccttctatcagtggtttctgaggaactacccgggcaatgct
ggatgctcgccagcagaaacggaaccatttgaacatgctatcgtgacaggttcctgtgta
gcagtggtcgaccacagcccagtggacccggatgaacttccactcagtcaaggtgacatt
gtggagatccagggtctactcatccgaggcctggatgtgttcatagcaacgcactcttgc
acaggtcacactggtttcatacacaaggcccatgtcaagcctctggacaccataccccta
cggttagtctttctgactgaggaggagagggccagcctcgctcaggtcaacccctgcagc
tctgagccaagtgacagcggcctgctggagagactcttctcgtccgacatcagctctgtg
tataggctagacagactggatgagacagacttcctgtacatcagaaaccggccaaaacat
gatcataaggttcctgcaagcacccgtcagagcgtcgtgtcagacaaaagtgcagggact
cccccctaccactcctctcctcgcacttctctctcttactcctcacctcgcctgtcactc
tatcagtccctcaatcctctgccacgtgagggagagcgcctgtccttgattctggacgac
acattcagagaaatggacgagttccaggaagacccacctctcttcttggaggagaacagc
tgggagggggaggactctgaattcagtgaccccacactgaccctgctcaaccatgaacgc
ttccaggaggacctcctgccgctctacgacctgcagtactccttcctgcgggtgaccttc
agtggtaagactgaggacgagctgctgggacacctagagagtatcagggagagcgccaag
aggatgggcttggagtgggcacatcgacgggcatgcttcctcctgggaagactctgtgcc
cggaagctaaagctgtcccaggcccgtgtgtactatgaggaggctctcagtgttcgtgtg
gacagtttctctgacacgccgctcctcgtcgctctctacacaaacctcaccgctatctac
ctgaagcagcgtatgacggacaagctgccccagaccctggagaaggccattgccctgcta
ctctgtctcccctgccacaccttcacctccacggacgaggttgaactgctgcagctactc
ctgaggaggtcggtggtgatgggggacaaacacctggaggctcgcgtctgctacctcgtc
tccagcctcttccttcttcgcaggaagactgatgacgccctcccctttgttgagcgacta
cagttcctctcggtgacgctctctgccgccgaggggcgtcccattgttcctttggacctc
aactggctcttgagctggctctatcatcgtaaatacatgccttacttagcgctggcttct
ctgagcctggactcaagacaggaccactcacttcacagcgctttccggaggattgagttg
tttatcaggaactctgttcgcctgaacccgtgctggaatgaaggcacctccctgcttcct
gcccagattgtgatttaccttcagcaggcgctgattatagcagagcaaggggaggacttg
aagacccagagggacctgtgtcagagcttggccacagtctacctgcagtacgacgctctc
gataaggcggtgctttgtgctcaacaagctgtagagacaggaggtcacatcaatgaggag
gagggctttgaggcctctgtgctgcttgggtggctgctggtgttgacgggtgaggctgag
agggcccagagtgtcctgcagccactgctcacatcactccagggcacagacagtcccacg
cagcgaggggtgatccacaacctcttggctctgtgtctgaggcagcagggttgcatcccg
gaggcaggcaggcatctccactcggccttggtgatctcaagggaaagtggaaaccagagg
aaccaggccctggcactggccaacctgggctgcctggcattggatgtgggggcgcctttg
gtggcagaacgcttcttggtcaggtccctgcatctttttctggagctctgggaaagcccc
atcgacgaggagcatgtccagacctacctttggctggggcggagctacaaagacaggagg
aagagtccggacagcagggcctgttatgaaatggggctactaattgcactacatgccagg
aatttacacagtcggatggtggtggccaaggtgctgagtcaagtgtatgctgacatgctg
ctgtacagccagagcatcgtctactatgagcactgtgtgtcggtatgcagagagctgaag
gacaagagactggagggagagtatctggaaatcctcagcagcctctacctctcactcaac
actgaaagatcatctcgtaaatctctggactacaccaagcagnncctgaggatttctatt
gatttgggcaagagagaggaagagtcagagacctggctgcaggtgggacgcatctattac
ctcatccaggaagacgaactagctgacatgtacctgcaggcagcagtgaagacggccctg
aggatgaacgatcatcacttcgccatgagcatctacgaggaggcaggagacgtctacttt
aaaggctccaggaaccgaatggcttcaatgcctttctacagggatggcgctctgccgttt
gcacggagcatcaaggacatccattcagagttccgtttgttgagtaaactgacagagctg
ttaatgaaccagggagagcaggaagaggctctgcagtacgcaacattggctgttcagatc
gctggaaaaacaggtgtgcatgtgaatgagaggaccgcctaccaccggctggctacagtc
tactacaaccagcagcagtacgagttggcagaaaactactacctcaagtcactctccctg
tgtccgcccgccctgcaggaccccatggaggctcgctactacaccaaggtgtacagccga
ctgggcaatctcactctacacaaactgaaggattcttttgacgcagtgggctacttccat
ttggctctagccgcggccctggaggaccaaactaaccccgaggctctgtatgtggtgtac
atgaagctggcagagatccacggcaaccacatgcctgatgctcagctgtgccgagaatac
agagacagagccgagggtctgaagagagttttggctggagaggaagaggctgctgttgaa
gaggagaacatggaggatgcagatgtagagcctggccaaaagaaggacgaggaccctggt
gctgatatggagcgtacggaaagtttgcttagacaaactgcatgttcattcnnacctgaa
aaagaaaaatgtgaagataacttgcttccaagaactggtatacttcacagagacacagag
gatatatgtacagacactaatattggagatgatcacattaatcgtgatgcagatggctct
cttgtggacgccttggagtctgagacagaaatcatcggcagtaagtcgcacagtgatagt
attttaaccgagtcctttgatacagccaaggagcagatctcagactccagcagctccact
gacactttacaaactcatcagaatcaagcagatgggaaagactttgacactgacacgccc
agtcagtcacctgataatcacaaaagtgacatcacaagacgcacagtttctgataatcat
gatgaacaacacacccctgaagaaacggatgtgcatgcataa
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