Cyclopterus lumpus (lumpfish): 117737729
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Entry
117737729 CDS
T09199
Name
(RefSeq) protocadherin beta-16-like
KO
K16494
protocadherin beta
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117737729
Cell adhesion molecules [BR:
clum04515
]
Cadherins
Protocadherins
117737729
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Bact_surface_Ig-like
7TM_GPCR_Sri
Peptidase_S55
GPR180-TMEM145_TM
Motif
Other DBs
NCBI-GeneID:
117737729
NCBI-ProteinID:
XP_034399769
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Position
10:12957502..12960290
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AA seq
826 aa
AA seq
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MMARLWITDIRGRGQALFVILCLFTRSSVTGQARYSVAEEQGEGSFVGNIARDLGLDVVR
LVSGKARIITKGSRQYVDLNRDKGTLVIKERIDREELCGKTTPCSFSFEVILENPIQLYR
VTVEVIDINDNSPSFPKDEITLNIAESVASTTRFSLESAYDPDVGINDIQKYILKPVDHF
KLEVQSQSDGGKFIEMVLQNPLDREKEETHTLVLIASDGGEPHRSGTVRIHITVLDANDN
APVCSQPVYKAEVKENSPEGTVVTTVSSNDADKGVNGDVTFSIAHVTREAKQLFEVNVKT
GEIKVSGKLDFEKSKTYQLNVKASDHGGYSDTCKVIIQIIDENDNVPTIQMMSFSYSISE
DSPPGTTIAVINVDDEDSDGNGIVKCSINADMPFKIESSLTGYYTIVTDNFLDRETIPEY
NITITVSDQGSPPLTSRKHINVKVSDVNDNLPTFYQSEYIKTVPENNSPGFSVFTLSASD
ADWGQNARFSYFLEEKMINGAAVSSLVSVNSESGVIHAVRSFDYEQLKWFEFNVTARDAG
SPPLSSVAIVRIVVQDQNDNPPQVLYPVQTGGSLVAEMVPRSVDVGYLVTKVVAVDVDSG
QNAWLSYKLQKATDRALFEVGLQNGEIRTIRQVTDKDAVKQRLTVIVEDNGQPSRSATVI
VNVAVADSFPEVLSEFIDFTQDKEYNDNLTFYLVLALAVVSFLFITSLVVIISVKIYRWR
QSRVMYHSNLPVIPYYPPRYSDTLGTGTLQHVYNYEVCRTTDSRRSDCKFNGAGSQNVLI
MDPSSTGTMQRIQSEKSILDEPDSPQEVRKNTQHVYSLRYFFSEFD
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgatggctcgtttgtggataaccgatataagaggccgaggacaagcactgtttgtcatt
ctttgtctttttacgcggagctcagtgactggacaggctcgctattccgtagcggaggag
cagggagaggggtcttttgttggaaacatcgccagagatttaggtttggatgtggtgagg
ctcgtttcaggtaaagctcgtatcattacaaaaggaagccgacagtacgttgatttaaac
cgagacaaaggcacccttgtgattaaagagcgaatcgaccgagaagagctctgtggaaag
acgacgccctgtagcttcagtttcgaggtaattttagaaaatccaatccagctttatcgg
gtaaccgtggaggttatagacataaacgataacagcccgtccttcccaaaggatgaaatc
actttaaatatagcggaaagtgttgcatcaactactcgcttctcactagagagtgcatac
gaccccgatgttggaattaacgacattcaaaaatacatactcaaacccgtagatcatttc
aaattggaagtacagagccagtctgatggagggaaattcattgaaatggttttacaaaac
ccattagaccgagagaaagaggagactcacacgctggtgctgattgcttcagatggaggg
gaaccacacagatcagggacagtacgtattcatattactgtgctagatgccaacgataat
gctccagtgtgtagtcagcctgtttataaagcagaagtcaaggaaaactctccagaagga
actgtcgtcaccactgtgagctcaaatgacgcagataaaggagtcaatggtgatgtaaca
ttttccatagcacatgtcaccagagaagcgaagcagctttttgaagttaatgttaaaact
ggagagattaaagtttcaggtaaactagattttgaaaaatccaagacgtatcaattaaat
gttaaggctagtgatcacggaggatattctgatacatgcaaagtaataattcaaataatt
gatgagaatgacaacgtcccgacaatacagatgatgtcattttcttactcgatatccgag
gattctcctccaggtacaactatagctgttattaacgtggatgacgaagactctgatggt
aacggtattgtcaagtgctccattaatgctgacatgcctttcaaaatcgagtcttcatta
acaggatattataccattgtaaccgataacttcttagacagagaaactattcctgagtat
aacatcaccattaccgtctctgaccaaggctccccgcctctgactagcaggaaacacatt
aatgtaaaagtgtctgacgtgaatgacaaccttcccacattttaccaatcagaatatatt
aagactgtaccagagaataactctcccgggttttcagtgttcactctcagtgctagtgat
gcagactggggacaaaacgctcggttttcttatttcttggaggaaaaaatgattaatgga
gcagctgtgtcttcgttagtgtctgtgaattcagaaagtggtgtcattcacgcagtgagg
tcatttgattacgagcaactcaagtggtttgaatttaacgtaactgctcgtgatgctgga
tcccctcctctgagttcagtggcaatagttagaatagtagtccaggaccagaacgacaac
ccccctcaggttctgtacccagtccagactggtggctctctggtggctgaaatggtgcct
cgttcagtcgatgtgggctatctggtcactaaagtggtggctgtggatgtggactctgga
cagaatgcctggctctcctataaactgcagaaagccacagacagggcgctgtttgaagtg
ggcttacagaatggagaaataagaactatccgccaagtcactgataaagatgctgtgaaa
caaagactgactgttatagtggaggacaacgggcagccctctcgttcagctacagtcatt
gttaacgtggcggtggcggacagcttccctgaagtgctgtctgagttcattgactttaca
caagacaaggagtacaacgacaacctgactttctacttagtgctggctttggctgtagtt
tccttcctcttcatcacatctctagtggttattatatcagtgaagatctacaggtggaga
cagtctcgcgtcatgtatcactccaatctccctgtgattccgtattatccaccacgttac
tcagacactttggggacagggactctccaacacgtgtacaactacgaggtgtgcaggacg
actgactccagaaggagtgactgtaagttcaacggagccggtagtcagaacgtgctgata
atggaccccagttctacagggacgatgcagcggatacagagtgagaagagcatcctggat
gaaccagactctcctcaagaggtgaggaagaatactcaacatgtttactccttgagatat
ttcttctctgagtttgactga
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