Cyclopterus lumpus (lumpfish): 117738575
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Entry
117738575 CDS
T09199
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117738575 (arid1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117738575 (arid1ab)
03021 Transcription machinery [BR:
clum03021
]
117738575 (arid1ab)
03036 Chromosome and associated proteins [BR:
clum03036
]
117738575 (arid1ab)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Helix-turn-helix
ARID
117738575 (arid1ab)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117738575 (arid1ab)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117738575 (arid1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
117738575
NCBI-ProteinID:
XP_034400349
Ensembl:
ENSCLMG00005003742
LinkDB
All DBs
Position
11:complement(15049985..15100783)
Genome browser
AA seq
2331 aa
AA seq
DB search
MAAQVASVATLNTSPPSELKKPDRDPQEESVPGEKQHENKEPGPDGGSPGQKELQDGTDA
GNAGGGGDPDMKNGNGNLPRVNNNSSNQNDSGGPEGNNHPGMGHHHPGPFPPPPYGYNQH
YSRAPFHQHGGQQSPGMAAASGPGMMDPYPPNSHEHGYPNHYNNYSPFQNRTSYQGQGYG
AMNSPRNNQPPAAGGQPGKQQPAGGTTAMAASYNNQRYNVGNQQPTSTPTLNQLLTSPSS
ARSYPNYPQGDYNNQEGASKGPGDMGSSQYGGVHPGWQQRAHHQPPMSPGNTGQPPNRNQ
PPSPMDQVGKMRGQSYGGGPNPYTQQQQQQQQGAPAGPGPQQGGSYPGQGYGPPGPQRYP
MAMQNRTPGAMGGMQYGQQMSAYGQQGPGGYSQQSQGYYGQHGAPPHPGQQQQQPPYSGQ
PQGSSGAPYPQQGHPAQPSGQHGQPGPPYQQSQGPHGPPPGQPPYSQPPQSQPGQPPYVP
PQQQQQPQQQQGPGPQTQQGPQGQPGYQQSPGPGQPPQQQTPQPQPQPQPQPQQGPPQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPGVPSPQAQQPPGHGQQGQPSPYSQT
PPLQQPPQQQQQSPYQRFPPPPQELSQDSFSSQSSAPPSNQPMASNKSSQEDSMQGRPSS
LPDLSGSIDDLPTGAEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLSGIRGPSPS
PVGSPASVTTSRTGPLSPAAVPGNQMPPRPPSVQSDTIMHSSMNQSAMGQERVYMRNPQM
PPYGSPGQPGSALSPRQSSGGQMHAGMGPYPQNNSMGNYGPQGGQYGPQGYPRQPGYTGM
PNANYPTGPGMSGSMNPMPGQGSGAPYGGIPPGRIVPGQMGARPFGPAMASNMVGMPPQV
ASGMCPPPAMNRKDGGPSMHHGPTNSVHNRPPGYPNMAQGMMGTGSPYGPGMNSMHGMMN
QAGPGPYPTGANMANNTPGMAPSAEFGVEKMNPTQKINNKVEGTPKPETKKKSSSSTITN
EKITRLYELGPEPERKMWVDRFLAFAEEKAMGMNNLPAVGRKPLDLYRLYVSVKEIGGLT
QVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPADFFNTDTKKN
QPKVQPPSPAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHTQMPPMPGVRSSVNLQ
DPFADGGDPAFSRRNAMTPNSQGYQPGMGGPEMIARMGPYESNKDPFGGMRKAGEQFMQP
GPNSGMAEQYNRGPPGPMGSNMQMGQRQQYPYGYDRRPEPGMGPDGSMGPGAPQPNMMPS
GADTGMYSPSRPPPQQRHESYANQYPGQGAPPGGPYPNQQPGMYPQQQPNYKRPVDGGYG
PPAKRHEGEMYNVPYSGQQQPGPQPSGPQGQQDMYNQYNAYPGGDRRPPGPQNQFPFPFG
RDRVPPSAGPNSQSPMPPQMMSSPMPSGPDGPQGPMWQGRNEMGYPNYPNRQGPPVPGQG
PGYHGMNRSEEMMPSDQRMNHEGQWPGHVNQRQPPFGPGGSGPPMTRPLPSTYQTSQNHI
PQVSSPTPMPRPMESRTSPSKSPYMHPGIKVQKAGPPVPASHIGQAPVQQPMIRRDVAFP
PGSVEASPPHLKPRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIT
TFNLCQLPGFLELVVEYFRRCLIEIFGILKEYEVGDPGQRTLIDPNAAEDPDDDILMPEG
EDMDVDEEDEEDEEVEETKATPDTPALVQVKQEEESSHKHASSEDEDEEKERESSIKEPN
TSTSGSSQDPNLHSEKPKQASKFDKLPIKVVRKKNPFLVNHSSKLGQRQSFDSGLTHWSI
GGGDTTEHIQTHFESRMDLLKQRKRKPTATESRKKAQVTETVTENPDKSKSNGESRPRQQ
LPESSEPQKSPAEKTPPPLPPPLLPIGAPVTATIDDVLSARPGSVTEEVVRGGAEEQKEN
GKYLFSINPDLQSRRNIKILEDEPHSKDETPLSTLSDWQDSLARRCICVSNIVRSLSFVP
GNDLEMSKHPGLLLLLGRLVLLHHRHPERKQAPVTYEKEEEEDEGVSCERDEWWWDCLEV
LRENCLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPSAEALDPFPTLGPHGSLSPQ
RLVLETLSKLSIQDNNVDLILATPPFSRLEKLYGSLVRLVGERKVAVCREMAVVLLANLA
QGDSLAARSIAVQKGSVGNLLGFLEDSLAATQYQQSQSSLLQMQGGPQFEPTSVDMMRRA
ARALHALAKLEENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6996 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgctagcgtcgccactctcaacactagcccgccatccgaactcaaa
aagccggatcgggacccacaggaggagtcggtaccgggagagaaacagcatgaaaataag
gaaccgggacctgacggcggatctcccggccagaaggagctgcaggacgggaccgatgct
ggaaatgctgggggaggaggggatcctgacatgaagaacggcaacgggaatttgccgagg
gtaaataataatagcagtaatcagaatgattcaggcgggcccgaggggaataaccatccc
ggaatgggacaccaccacccgggcccctttcctccacctccttacggttacaaccagcac
tacagccgggccccttttcatcaacatggcggacaacaaagccctggcatggcagctgca
tcggggccgggcatgatggacccgtacccccctaattcacacgaacacggctaccccaac
cattataacaactacagccctttccagaacaggacttcttatcagggccaaggatacggg
gccatgaattccccgcgtaacaaccagcctccggcagctggggggcagccaggcaagcag
cagccagcaggaggaaccaccgctatggctgcctcttacaataatcagaggtataacgtg
ggaaaccaacaacctacgtccacgccaactttaaatcagcttttgacatcccctagctcc
gccaggagctacccgaattacccccaaggagactataacaatcaggaaggggccagcaag
gggccaggagacatgggcagcagtcagtatggtggggtccatccgggttggcaacaaagg
gcccaccatcagcctcccatgagcccgggaaacactggacaacctcccaacagaaatcag
cctccaagcccaatggaccaggtcggaaagatgcgcgggcagtcatatggaggaggaccc
aacccctacacccagcaacagcagcagcagcagcaaggggctcccgcaggtcccggaccc
cagcagggaggctcttaccccgggcagggctacggacccccgggccctcagaggtatcct
atggcgatgcagaaccgaacacctggcgctatgggcggcatgcagtacggacagcagatg
tcagcttatggacaacaggggcctggtggctacagccagcagagccagggctactatggt
cagcatggcgccccccctcaccctggccagcagcaacagcagcctccgtactctggtcaa
ccccagggcagctctggagctccctacccccaacagggccaccctgcgcagccttctggc
caacatgggcagcctggacccccctaccaacaatcccaaggtccacacggtcctcctcca
ggtcagcctccctatagccagcccccacagtctcagccaggacaacctccctacgttcct
ccccagcagcagcagcagcctcaacagcagcagggaccgggtccccaaactcagcagggc
ccccagggccagcctggctatcaacaatcccctggaccggggcagccaccacagcagcaa
accccgcagccacagccgcagcctcagcctcagccgcagcaaggacctccacagcagcag
cagcagcagcaacaacaacaacaacagcagcagcaacaacaacaacagcaacaacaacaa
caacaacagcagcagcagcagcaacaacaacaacagcaacaaccaggggttccatctcct
caagcccagcaacctccagggcacggacagcagggtcaaccgtcaccgtactcccagaca
ccgccactgcagcagccgccacaacagcagcagcagtcaccatatcagaggttcccgcct
cctccacaggaactctcccaggattcctttagctcccagtccagcgctcctccttccaac
cagcccatggcttccaacaagagcagtcaagaagacagcatgcagggccggccatccagt
ctgccggatctgtcgggctcgatcgacgacctgcccaccggtgcagagggggccctgagc
cccggcgtcagcacctcaggggtatccagcagtcagggggagcagagcaatcccgcccag
tcgcccttctcgccgcacacgtcgccccacttgtcaggcatacgtgggccctcgccatca
cccgtgggttcccccgccagtgtcaccacctcccgcaccggccccctgtcccctgctgct
gtgccaggtaatcagatgcctccgcggccacccagcgtccagtcagacaccatcatgcac
tcttccatgaaccagtccgccatgggccaggagcgggtgtacatgcgtaaccctcagatg
cctccctacgggtcccctggtcaacctggctccgccttatctccacgccagtcctcggga
ggccagatgcatgctgggatgggaccatatcctcagaacaactcaatggggaactatggg
cctcagggggggcagtatggtccacaaggttaccccaggcagcccggctacacagggatg
cccaatgccaactaccccaccggccccggcatgagtggctccatgaaccccatgcctggt
cagggcagcggggctccgtatggcggcatcccgcctggcagaatagtcccggggcagatg
ggtgctcggccctttggtcctgcaatggcttcaaacatggtcggcatgccgcctcaggtg
gcgtccgggatgtgtccccctccggccatgaacaggaaggacggcggcccctccatgcac
cacgggcccacaaactctgtacacaacaggcctcctggctaccctaacatggcccagggc
atgatgggaacaggctctccatacggccctggaatgaacagcatgcacggtatgatgaac
caggcagggcctgggccttacccgacgggagcaaatatggccaacaacactcctggaatg
gctcccagtgcggagtttggcgtggagaaaatgaaccctacccagaagataaacaacaaa
gtggaggggactcccaagcctgaaaccaaaaagaagtcgagctcttccaccatcactaac
gagaagatcactcgtctgtacgagctcggtccagagccagagaggaagatgtgggtggat
cgatttctggccttcgccgaggagaaggccatgggcatgaacaacctgcccgcagtcgga
cgcaagcctctcgatctctacaggctctacgtgtccgtcaaagagatcggcggcctcacc
caggtgaacaagaacaagaagtggagggagctggccaccaacctgaacgtgggcacgtcg
agcagcgcagccagttcacttaagaaacagtacatccagtgtttgtacgccttcgagtgc
aagattgagcgtggcgaggacccgcccgcagacttcttcaacacggacaccaaaaagaac
cagccgaaggtccagcctcccagcccagctggttctggatccctgcaaggaccccagact
cctcagtccaccagtagttcgatggcagaaggtggagacctgaagcccccaaccccagcc
tccaccccgcacacgcaaatgcctccaatgcctggcgtcaggagtagcgttaatctgcag
gacccctttgcggatggcggagacccagcgttttccagaaggaacgcaatgactcccaat
tcacagggctaccagcctgggatggggggcccggagatgatagctcgaatgggtccctac
gagtccaacaaggaccccttcggcgggatgaggaaagctggagagcagttcatgcaacca
ggtcccaacagtgggatggcagaacagtataaccgaggcccgccaggccctatgggtagt
aacatgcagatgggccagaggcaacagtacccttacggatacgacagaagaccggagccg
ggcatgggccctgacggcagtatgggaccaggagctcctcagcccaacatgatgccttct
ggtgccgacacagggatgtactcgcccagccgccctccgccacagcaacggcatgaatcc
tatgccaatcagtaccctggccaaggagctccccctggtggcccgtacccaaatcaacag
ccaggaatgtatccacagcagcaaccgaactacaagcgtcccgtggatggtgggtatggc
cctcctgccaagcgccacgagggagaaatgtacaatgtcccctacagtggtcagcagcag
ccaggaccccagccctcgggaccccaaggccaacaggacatgtataaccagtataacgca
tatcctggaggggaccgcagaccaccaggtccacagaaccagttcccctttccctttggc
cgggaccgagtaccgccatctgcaggcccgaactcccagtctccaatgcctccccaaatg
atgtcgagccccatgccttcgggtcctgatggcccccagggcccaatgtggcagggtcgc
aatgagatgggctaccctaactatcccaacagacagggacctcctgtaccaggccagggc
cccggctaccacggcatgaaccgctcagaggagatgatgccctcagaccaacgcatgaac
cacgaggggcagtggcctggccacgtcaaccagcggcagccgccgtttggccccggcggt
tctggacctcccatgaccagacccctgccatccacctaccagacttcccagaaccacatt
cctcaggtgtcaagcccaacaccaatgccccggcccatggaaagcaggacgtcacccagc
aagtccccctacatgcatccggggattaaggtgcagaaagctggacccccagtacccgcc
tcccacattggtcaggccccagtgcagcaacccatgataaggcgagatgtggccttccca
cctggctctgtggaggcctccccaccccatcttaaacctcgcagacggctcaccatgaaa
gacattggcactcctgaggcttggagagtgatgatgtcactaaagtcaggcttactagct
gagagcacctgggctttggacaccattaacattttactgtatgatgataatagcattact
acttttaacttatgccagctgcctggtttcctggagctggtggtggagtacttcagacgc
tgcctcatcgagatctttggcatcttaaaggagtacgaagtcggagaccccggccagcgc
accctcatagaccccaacgcggctgaggatcctgatgatgacattcttatgcctgagggc
gaggacatggacgtggacgaagaggacgaagaggatgaggaggtagaggaaacgaaggcc
actcctgacacccccgcactggtccaggtgaaacaggaggaggagagctcacacaaacac
gcgtcttcagaggacgaggatgaggagaaggaaagggagtcttctattaaggaacccaat
acctctacttcagggtcctcccaggatcccaacctccactcggaaaagcccaagcaggcc
agcaagtttgataaacttcccatcaaggtggtgcgaaagaagaaccccttcctggtgaac
cactcgtccaagcttgggcagcggcagagttttgacagcggcctgacacactggagcatc
ggtggcggcgacaccaccgagcacatccagacacacttcgagagccggatggaccttctc
aagcagcggaaacgcaagccaacagccactgaaagccgcaagaaggcccaggtgactgag
actgtgacagaaaaccctgataaatccaagtccaatggggagagtagacctcggcagcag
ctgcccgagtcttccgaacctcagaagtctccagcggagaagactcctcctcctcttcct
cctcctcttcttccgattggtgcaccagtcactgccacaatcgatgatgtactatctgcc
cgcccgggctcggtcaccgaggaagttgttcgtggaggcgcagaagagcagaaggagaac
ggcaagtacctgttcagcatcaaccccgacctccagagccgacgcaacatcaagatcctg
gaggacgagccccacagcaaggacgaaacgccgctcagcactctgtcggactggcaggac
tcgctagcccggcgctgcatctgcgtttccaacatagtgcgcagcctctcattcgttcct
ggtaacgacctggagatgtcgaaacacccgggcctcctgctgctgttgggccgcctggtg
ctgctccaccacaggcaccccgaacgcaaacaggccccagtcacctacgagaaggaggaa
gaggaagatgaaggcgttagctgtgagagagacgagtggtggtgggactgcctcgaggtg
ttgagggagaactgcctcgtcactctggcgaacatctcgggccagctggacctttctatc
tatccagagagtatatgcctgccgctgttggatggcctgcttcactgggctgtctgcccc
tcagcagaggccctggaccccttcccaacgctggggccccacggctcactttccccccag
agactggtcctcgagaccctcagcaagctcagcatccaggacaacaatgtcgacctcata
ctggcaacgccgccattcagccgcttggagaagctgtacggctcgctggtgcgcttggtc
ggcgagcgcaaagtggccgtttgccgagaaatggcggtcgtcctgttggccaacttggcc
cagggcgacagcctagcggcgcggtctattgccgtgcagaaaggcagcgtgggtaacctg
ttgggcttcctggaggacagcctagctgccacacagtaccagcagagccagagctccctg
ctacaaatgcagggaggacctcagtttgagcccacgagtgtggacatgatgcggcgggcg
gcccgggccctgcacgccctggctaagttggaggaaaaccactcggagttcacgttgtac
gagtcgcggctactggacatctcagtgtccccacttatgaactctctggtgtcccaagtg
atctgtgacgtactgtttctgatcggccagtcatga
DBGET
integrated database retrieval system
