Cyclopterus lumpus (lumpfish): 117738622
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Entry
117738622 CDS
T09199
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117738622 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117738622 (smarcc1b)
03036 Chromosome and associated proteins [BR:
clum03036
]
117738622 (smarcc1b)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117738622 (smarcc1b)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117738622 (smarcc1b)
PBAF complex
117738622 (smarcc1b)
GBAF(ncBAF) complex
117738622 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
Totivirus_coat
DUF919
Motif
Other DBs
NCBI-GeneID:
117738622
NCBI-ProteinID:
XP_034400466
Ensembl:
ENSCLMG00005021936
LinkDB
All DBs
Position
11:complement(11761109..11768897)
Genome browser
AA seq
954 aa
AA seq
DB search
MATMSGGTNLGIPGTSHASSGTSAHRKKDSSPSARFWESPDTLAQLEVVRQWIGKHYKKY
VLVDAPSCQALAGVTLQLLQFQEDAFGRQATSPALTKLPAQCFLDLRPGGGLCHILGSAY
KFKAEQGWRRFDLQNPSRNERNVEMFGAIERALIQNNCMSLPVVYVDSTLDQELASRLTD
IITKHQGTLTADRTLASHHIYSSLTSKEEDDWMRPVMRKDKHVLVHWGMHPDSYDSWLSS
SDVEREVEEKPHSEKPWRVHAGWVLDTDVFNEWMNEEDYCIDERNVPIVFRQRIHLRDNQ
DSKFIPSKKRRRSPSPPSSEVRKKGKKGRRRGPQEEGPEEDLTKDMEDPTPVPNMEEVVL
PKNVNLKKDSENTPVKGGTMADLDEQEDDFPGRDDDEGRGDITRLSEGEDNITEQTHHII
IPSYTSWFSYNSIHAIEKRALPEFFNGKNKSKSPEIFLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVSASQHMLYFPEKSKEKPSDCQNFGLRSDIYTKKHPKTKGANAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQS
ENPVMSTVAFLASVVDPRVASSAAKAALEEFSKVQEESVDKISELSNQPDKTESMDAEIM
ETNSASNQVSLMADGLTVEPSRAKVEGELVKRENDENILAEERDGRGDDEESVGRGDVDE
ARGMEQDLVEGRVAMAAAAALASAATKAKHLAAVEERKVKSLVALLVETQMKKLEIKLRH
FEELETIMDREKEALEQQRQQLLTERQTFHTEQLKQAEIKVRQQREQQGQPGFTMQHSAL
PTPGQPMPNRMMPGGGNAQVMAPRHPGAPNGMYPSSQPDGIAPAQPGPPASTHS
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggaacaaacctcggcatccccgggacaagccacgccagctcc
ggaacatccgcacatcggaaaaaagacagcagcccgtccgctaggttctgggagagtccg
gatactttagcccagctggaggtggtgcgacagtggatcgggaagcactacaaaaagtac
gtgctggtggacgctccgtcgtgtcaggctctggccggagtgacactccagcttctccag
ttccaggaggatgccttcggcagacaagcgaccagtcctgctctcaccaaactacccgca
cagtgctttctcgacctgcggccagggggtggactctgccacattcttggcagtgcctac
aagtttaaggcagagcaaggctggcggaggtttgacttgcagaatccatcaagaaatgaa
agaaatgttgagatgtttggtgctattgaaagagccctgatccagaacaactgcatgtca
ctgcctgtggtatatgtggactctacactggatcaggagctggctagcagacttacggat
attatcaccaaacaccagggtactctcactgctgaccgaacgctcgccagtcaccacatc
tactcctcacttacttctaaagaggaagatgattggatgcgtcctgtcatgcggaaagac
aaacatgtcttggtacactggggcatgcaccctgacagttatgacagttggctgtcctca
agtgatgttgaacgtgaagttgaagagaaaccacattcagaaaagccatggcgggtccat
gctggctgggttctggacacagatgttttcaacgagtggatgaatgaagaagactattgt
atagatgagaggaatgtaccaatcgttttccgccagcgcattcacctcagagacaaccag
gactccaaattcatcccctccaaaaagagaagacgctccccctctcctccctcctctgaa
gtcagaaagaaaggaaagaaggggagaaggcgcggaccacaagaggaagggccagaagag
gacttgaccaaagacatggaggaccctacccctgttcctaacatggaggaggttgtacta
cctaagaatgtcaacctgaagaaggacagtgagaatactcctgtcaaaggagggactatg
gctgacctggatgaacaggaggatgatttcccaggaagggatgatgacgaggggagaggg
gatattactcgcctgtcagagggagaggacaacatcacagaacaaacccatcatatcatc
ataccaagctacacatcttggttcagttacaacagcattcatgcaatagagaaacgggca
ttgcctgaattcttcaatggaaagaataagtccaaatcaccagaaatcttcctggcatac
cgtaacttcatgatcgacacataccggctcaacccccaggaatacctcagttcaacgtcc
tgcagacgcaacctcactggagacgtctgtgctgtcatgagggttcatgcatttttggag
cagtggggtttgattaactaccaggtggatgcagaaagcaggcccctccccatgggacca
ccacccacccctcatttcaatgtactggctgatactccgtccgggctggcccccctacaa
cacaaaccactgcaggtgtcggcctcgcagcacatgttatattttccggagaagagcaaa
gagaagccttcagattgccagaactttggtctgcgctccgacatctacaccaagaaacac
cctaagactaaaggtgcaaatgcaggaagggaatggacagagcaagagacacttttgcta
ttagaggccttagaggtctacagagacgactggaacaaagtatccgagcatgtgggctcc
agaacacaggacgagtgtatcctccacttccttcgtctgccaatagaagacccttatcta
gaagactcctcggcctcccttggcccactggcgtaccagcctgtgcctttcagtcaatca
gaaaaccccgtcatgagcactgtagccttcctggcatccgtggtggacccacgagtggct
tcatccgcagcaaaggctgcactggaggagttttccaaagtgcaggaggagtcggtggat
aagatctctgaactgtccaaccagcctgacaaaacagagtcaatggatgcagaaataatg
gaaacaaactcagcctccaatcaggtctctttaatggccgatgggctcacggtggaaccc
agtcgggccaaagtagagggagaactagttaaaagggaaaatgatgaaaatatacttgca
gaggagagagatggaaggggagatgatgaagagagtgtaggtcgcggagatgtggatgag
gcaagagggatggagcaagatctggtggagggcagagtcgccatggcagcagcagctgct
ctggcctcagctgccacaaaggccaagcacttggcagcagtagaagagaggaaggtaaag
tccctggtggctctgctggtggagacccagatgaagaagctggagatcaaactgaggcac
tttgaggagctggagaccatcatggaccgtgagaaagaggctctagagcaacagcggcag
cagctcctgacagagagacagacgttccacactgaacagctgaaacaggcagagattaag
gttcgccagcagagggagcagcaggggcagccgggattcacaatgcagcattcagccttg
cctactcctggccagcccatgcccaaccggatgatgcctggtggaggaaacgcccaggtg
atggcccctcgacaccctggagctcccaatggcatgtacccgtcctcgcagcctgatggg
atagcaccagctcagccgggtcctccagcatccactcacagctga
DBGET
integrated database retrieval system
