Cyclopterus lumpus (lumpfish): 117738645
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Entry
117738645 CDS
T09199
Symbol
vars2
Name
(RefSeq) valine--tRNA ligase, mitochondrial isoform X1
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
117738645 (vars2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
clum01007
]
117738645 (vars2)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clum03016
]
117738645 (vars2)
Enzymes [BR:
clum01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
117738645 (vars2)
Amino acid related enzymes [BR:
clum01007
]
Aminoacyl-tRNA synthetase
Class I (U)
117738645 (vars2)
Transfer RNA biogenesis [BR:
clum03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
117738645 (vars2)
Prokaryotic type
117738645 (vars2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
tRNA-synt_1_2
tRNA-synt_1e
HrpB7
Val_tRNA-synt_C
Motif
Other DBs
NCBI-GeneID:
117738645
NCBI-ProteinID:
XP_034400528
Ensembl:
ENSCLMG00005001833
LinkDB
All DBs
Position
11:complement(271214..295875)
Genome browser
AA seq
1085 aa
AA seq
DB search
MWRAGRVPSWRVTARLCSNKPPTPSCSSSPQSNCSPRPHAEKQRRRRQREEAILSSQRST
AEDEAVTWREKQKIVYAAQTPPGTKKDTSLLLPSSYCPEYVESSWYQWWEKEGFFRPEQH
ERLSHRVDQTFALCIPPPNVTGTLHLGHALTVAVEDALVRRRRMQGYRVLWVPGCDHAGI
ATQTVVERRLLRDGGKRRQDFTRKQFLREVWKWKNETGEEIYHQLRRLGASLDWSRACFT
MDPGFSRAVTEAFVRLSDSGLIYRSEALVNWSCALESAISDIEPVDCCQVDSQELSGQTM
LSVPGYKDKVEFGTMLTFAYPLEGHDGEVAVSTTRPETMLGDVAVAVHPDDPRYQAVHGK
HCRHPFTNRLLPIITDSVVDMELGTGAVKVTPAHDHTDFLLSQRHALPRLTVIGGDGTMT
PPCGQWLEGVKRFDARQLVVDALVEKRLFRGKQNHAMTLPVCSRSGDIIEPLLKKQWFVS
CEEMAKKAIQVVEDGQLEIIPHHYTKTWKNWLSNISDWCISRQLWWGHQIPAYQVEFPNS
TAKQEEQWVWGQSEDEARQRAAVKYGVKPEDITLTQDPDVLDTWFSSGLFPFAMLGWPEQ
TTDLQCFYPSSILETGSDLIFFWVARMVMLGTELTGQLPFKQVLLHSLVRDRHGRKMSKS
LGNVIDPLDVIHGVSLERLQEKVKEGNLDPRERLVAMEAQRKDFPKGIPQCGTDALRFAL
CSHKMQGEDISLSISQVLSCRHFCNKMWQTLKFTLGVLGDNTTPVATLGETSALSSLDRW
ICSRLYSTVAECEQAFETYELHVVTSALYSFWVHSLCDVYMEHVKPVLLQQEEEAVVHAD
TEHHVRARQVATSILYHCVSMSLALLSPFMPFITEELWQRLQPFGPGAAAQTPLCLQPYP
CSSQLAHWHFPEEERDFQLVQEVMRVARSLRAQCGMTKEKPAMWVVCSPSQAQVLLHFGS
AVWTLSRISSLHIYCPHGVDQEELHSIPPPTGSLIGVVDHTCQLHLHIQSGVNIDKRMLL
QLSQRRDKIVPKLETILCRVRSPDYLTKVPAHVRQQMDTKTSALQQELKTIEDQLKVLRQ
TQTTE
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtggagggcaggacgtgtcccgagctggagggtgacagccagactctgttccaacaag
ccaccgacaccttcctgctcctcttcacctcagtcaaactgctctccacggccccacgca
gagaagcagcggcggagacgacagcgggaagaggccatactgtcaagtcaacgcagtact
gctgaagatgaagcagtgacatggcgtgagaagcagaagatcgtgtacgctgctcaaaca
ccaccagggacaaagaaagacaccagcttgctgctcccatcctcatactgtccagagtat
gtggaatccagctggtatcagtggtgggagaaagagggattctttcgtccagaacaacat
gagaggttgtctcaccgtgtggatcagacctttgctctgtgtatccctccaccaaatgtg
actggcactctgcacctgggccacgctctcactgtagctgtggaggacgctctggttcga
cggaggaggatgcagggctacagagtcctgtgggtccctggatgtgaccatgcaggtatt
gcaacacagacggtggtggagaggagactgctgagggacggagggaagcgcagacaggac
ttcaccaggaaacagtttctacgtgaggtgtggaaatggaagaacgagacaggagaagag
atctaccaccagctgaggaggctcggagcttcactggactggagcagagcctgtttcacc
atggatccaggtttcagcagggctgtgacagaggcctttgtcaggctgagtgactccggt
ctgatttatcgctccgaggctctggtcaactggagctgtgctctggaatctgccatatct
gacatagagcctgtggattgctgtcaggtggactcccaggagctgtctggacagaccatg
ctgtctgttcctggttataaagacaaggtggagtttggaaccatgcttacattcgcctac
cctttagaaggtcacgatggagaggtggcggtgtccaccacccgtcctgagaccatgctg
ggagatgtggctgtagctgttcaccctgacgatccccggtatcaggctgttcatgggaag
cattgcagacaccccttcaccaaccgactcctgcccattatcactgactccgtggtggac
atggagctaggaactggtgcagtgaaggtgactcctgctcatgaccatactgacttcctg
ctgtcacagagacatgcactgccacgccttactgtgattggaggagatgggaccatgact
ccgccctgtggacaatggcttgagggagtgaagcggtttgatgccagacagcttgttgtg
gatgccctggttgagaagaggctgttcagaggaaagcagaatcacgccatgactttaccc
gtctgcagccgctcaggagacatcattgaacctcttctaaagaagcagtggtttgttagc
tgtgaagaaatggctaaaaaagctatccaggttgtggaggatggacagctggaaatcatc
cctcaccactacaccaagacatggaagaactggctgtccaacatcagtgattggtgcatt
tccaggcagctttggtggggtcatcagatccctgcttaccaagtggagtttcctaattct
actgccaaacaagaggagcagtgggtttggggacagagcgaggacgaggcccgacaaaga
gctgctgttaaatatggagtgaagccggaagacatcactttgactcaggaccctgatgtc
ctggatacgtggttctcctctgggctatttccttttgcaatgcttggctggcctgagcag
accacggaccttcagtgtttctaccccagttctattctggagacgggcagtgacctcatt
ttcttctgggtggcgaggatggtgatgctgggcacagagctgactggacagctgcccttt
aaacaggttctccttcactccctggtgagagatagacatggcaggaagatgagtaaatct
ctgggaaatgtcattgacccattagatgttatacatggagtctctctggagagacttcaa
gagaaggtgaaggagggaaacctcgaccccagggagcggctggttgccatggaagctcag
aggaaagacttccccaaagggatccctcagtgtgggactgatgctctgaggttcgccctc
tgctctcacaagatgcagggagaagacatcagtctgtccatctctcaggtcctgagctgc
agacacttctgtaataaaatgtggcagacgctgaaattcacactgggagtgctgggtgac
aacacaacaccagtggcaacactgggagagacgagtgctctgagcagcttggaccgctgg
atctgctccagactctacagcactgtagcagagtgtgagcaggcctttgagacctacgag
ctgcatgttgtcacgtctgccctgtactccttctgggtccacagcctatgtgacgtctac
atggagcatgtgaagcctgtgctgctccagcaggaggaggaggcagtggtccacgctgac
acagagcaccatgtcagagcgaggcaggtggccaccagtatcctctatcactgtgtgtct
atgtctctggccctgctctcccccttcatgcccttcatcactgaggagctgtggcagaga
ctccagccattcggacccggagctgctgcccagacccctctgtgtttacagccatacccc
tgctcctctcagctggcacactggcatttccctgaagaggaaagggatttccaactggtg
caggaagtgatgcgagtggctcgctcactacgagcccagtgtggcatgaccaaagaaaaa
cctgccatgtgggtagtgtgttcccccagccaggcccaggtcctccttcactttgggtca
gctgtttggactttaagcaggatctccagcctccatatctactgtccgcatggagtggac
caagaggagctccactccatccctccacctacagggagcctcatcggagtggtggaccac
acatgtcagctacaccttcacatccagagtggagtgaacattgataaacggatgctgctg
cagctcagccagcgcagagacaagattgttccaaagctggagacaatcctctgcagagtc
cggtctccagactacctgaccaaggttcctgctcatgtcaggcagcagatggacactaag
acatcagccctgcagcaggaactgaagacaattgaggaccagctgaaggtcctgcgacag
actcaaacaacagaataa
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integrated database retrieval system
