Cyclopterus lumpus (lumpfish): 117738665
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Entry
117738665 CDS
T09199
Symbol
vps50
Name
(RefSeq) LOW QUALITY PROTEIN: syndetin
KO
K23288
syndetin
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117738665 (vps50)
Membrane trafficking [BR:
clum04131
]
Protein recycling
Others
EARP complex
117738665 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
117738665
NCBI-ProteinID:
XP_034400560
Ensembl:
ENSCLMG00005012106
LinkDB
All DBs
Position
11:12162764..12244506
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AA seq
993 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESMTDLSPVENLRIPSKEELRELREQPIDPQAEQEIIDSIEEV
YYSNDSFDMVQHELEKLPPELNLQELEEHRDKLKRQQAAVSKKVADLILEKQPAYVKELE
RVTALQTNLQLAAVICTNARRQLSVSKEGFTEASLGLLSNQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITVDSYIPCLSDLCKALWEVMLSYHRTMQWHEEHDQHETTPTTDG
AAAAESDESVVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQCRSPSISPSRQAGSSTGPAQGELSLFQQYLQEGNPFEMHAEQKEEETED
VLASNGYESDELEKSVYQDYDSDSDVPEELKQDYVDEQTGDAPLKSASRETIRSKKKSDY
NLNKTNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRN
DMPVPSPSLPTHGGRDAGPARVVGPACLYESSGLGLISSRLRTTLNRIQESLIDMEAVGE
NAPVHSAAEDRKEKVPSPHLSQLVVLTNSGTLYGLAQRVVATESLVFLAEQFESLQSHLD
TMMPAAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLLMAGVKWDIREIMSQ
HNVYVDVLLQEFEQFNKRCXDVSRHVRIPAAGVHVLWEHCIRLANRTLVEGYANVKKCSN
EGRALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQ
LANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctctgatggcgcggcagggcctgaagagcccccaggaaagcatg
acagacctcagtcctgtggagaacctgaggatcccgagcaaggaggagttgcgggagctg
agggagcagcccattgacccccaagcggagcaggagatcatcgacagcattgaggaggtc
tactactctaacgactccttcgacatggtgcagcatgaactggagaaactaccgcctgaa
ctgaacctgcaggagctggaggaacacagggacaagctgaagagacaacaggcagcagtt
tctaaaaaggtcgccgatcttattctggagaaacagcctgcttatgtcaaggaactggag
cgagtgactgcgttgcaaaccaacctgcagctggcagcggtcatttgcactaatgcaagg
aggcaactgagcgtgtcgaaggaaggattcacagaagccagcttgggtctcttgtccaat
cagaggagacgacagctgctgacaggcctgcttaagtcactgaggaccatcaagacactg
caaagaacagatgtgagactcagcgagatgcttgaggaggaagactatccaggtgcaatc
cagctctgtctggaatgtcaaaaagctgccagcaccttcaaacactacagctgcatcagc
gaattgaattccaaactacaagacactctggagcagatagaggagcagcttgatgtcgcc
ctatcgaagacttgtaagcactttgatgtttcgcactacaccaaggtccagctggcctac
acgctcctgggcaagacacagaccgctatggaccagcttcacatgcacttcacccaggcc
atccacaacacggtgttccaagtggtgctgggatatgtggagctgtgtgccggcaatgct
gataccaagttccagaagatgcagtacaaggacctgtgcacgcacatcaccgtggacagc
tacattccctgcctgtcagatctatgcaaggcattgtgggaggtgatgcttagctaccac
cgcaccatgcagtggcacgaggagcacgaccaacacgagaccacacccactacagatggc
gccgcggcggcagagtcggatgagtcggtggtggaccgcagctacgtgaagaagaagctg
gagcatggactgacccggatttggcaggatgtccagttgaaagtgaaggcctacatcttg
gggactgacatgtctaacttcaagtacgatgatttcattgtggtgcttgatgtcatcagc
aggctgatgcaggtgggtgaggagttctgcggcagcaagtcagaggtccttcaggagtct
atcaagcgccagagtgtcaactactttaaaaactatcacagggcacgactggaagagctg
aggatgtttctggaaaatgagacgtgggaactttgcccagtgaagtctaactttaacatc
gcccagctccatgagtttaagttcatgggccagtgtcgttctccgtccatttccccgagc
agacaggccgggtcctcgactggcccggctcagggggagctttctctgtttcagcagtac
cttcaggagggaaacccctttgagatgcatgctgaacaaaaagaagaggagacggaggat
gtgctggcatctaacgggtacgagtcagacgagctggagaagagtgtgtatcaagattac
gacagtgacagcgatgtccctgaggagctcaagcaggactatgttgacgagcagacgggg
gatgcccccctcaagagtgcgtcccgagagaccataagaagcaagaaaaagtcagactac
aaccttaataagaccaatgcgccgattctcaccaataccaccctcaacgtcatccggcta
gtcgggaagtatatgcagatgatgaacattctgaagccgatcgccttcgatgtcatccac
tgtgtgtcacagctcttcgactactatctgtacgctgtatacactttctttggacgcaat
gacatgcctgtcccaagcccgtctctgccaactcacggtggcagagacgcgggtcctgcc
agggtggtgggccctgcttgcttgtatgagtcatcgggtctgggccttatcagcagcagg
ctgagaaccactctgaaccggatccaggagagcctcatagacatggaggcagtgggggag
aatgcaccagtccacagtgcagcagaggacagaaaggagaaggtgcctagcccccatctc
agccaactggtggtcctcactaacagtgggactctttatgggctagctcagagagtggtg
gccactgagtctcttgtgtttctggccgaacagtttgaatccctccagtcccacctggac
acaatgatgcctgcagcgaagaagcccttcctgcaacagttttattcccagacggtgtct
acagccagtgaacttcggaaaccaatatactggattgttgcagcaaaggccatcgactac
gaacaaatgttgctcctgatggctggcgtgaaatgggacattagggagataatgtcgcag
cataatgtgtatgtggacgtcctgttgcaggagtttgagcaatttaacaagcgttgcnag
gacgtttccagacatgtacgcatccccgctgccggtgtccacgtgctgtgggagcactgc
atccgcctggccaacaggactctggtcgaaggctacgctaatgtgaagaagtgcagcaat
gagggccgggccctgatgcagctggacttccaacagttcctcatgaagctggagaagttg
actgacctgcgacccattcccgataaagagtttgttgagacctacatcaaagcctattac
ctcactgagaatgacatggagcagttcatcaagaatcacagggagtactccatgaagcag
ctcgccaacttggtgaacgtttgtctgggttcacatataaacaagaaggctcgccagaaa
ctcctggcggccatcgatgacattgacagacccaagagatag
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