KEGG   Cyclopterus lumpus (lumpfish): 117738742
Entry
117738742         CDS       T09199                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117738742 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clum03019]
    117738742 (exosc1)
Messenger RNA biogenesis [BR:clum03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     117738742 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     117738742 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 117738742
NCBI-ProteinID: XP_034400730
Ensembl: ENSCLMG00005009687
UniProt: A0A8C2Z4D9
LinkDB
Position
1:10197135..10201032
AA seq 194 aa
MSPMKLCVPGDKLCSAENCIPGTGVYLRHGYVYSSLAGYVLKKNEGEKLPVISVVRETEV
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSGAGAQMVPINWCEMQCPRTHSKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtctcccatgaagctgtgtgttccaggtgacaagctatgcagtgcagaaaactgcatt
cccggcacaggagtatatctgcggcacggctacgtgtactcctcactagcaggctacgtg
ctcaagaagaacgagggagagaagttaccagtgatctcagtggtgcgggaaacagaagtg
caactactacccgatgtaggggcaatagtcacctgtaaggtgaccagtatcaacccgagg
ttcgccaaggtccacatcctttatgtgggctccacacctctgaaggaccgcttcagagga
acaatcaggaaagaagatgtgcgtgcgacagagaaagacaaggtggagacgtacaaaagc
ttcagacctggcgacatcgtcttggcgaaagttatttctctcggtgatgtgcagtcaaac
tacctgttgacaacggcagagaatgaacttggggtggtggtggctcacagtggagcaggt
gcccagatggttcccatcaactggtgtgagatgcagtgtccacgaacgcacagcaaagag
ttccgcaaagtggcgcgagtgcagccggagtatctacaggcatga

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