KEGG   Cyclopterus lumpus (lumpfish): 117738796
Entry
117738796         CDS       T09199                                 
Symbol
pkd2
Name
(RefSeq) polycystin-2 isoform X1
  KO
K04986  polycystin 2
Organism
clum  Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:clum00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:clum03037]
    117738796 (pkd2)
   04040 Ion channels [BR:clum04040]
    117738796 (pkd2)
Cilium and associated proteins [BR:clum03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   117738796 (pkd2)
Ion channels [BR:clum04040]
 Voltage-gated cation channels
  Transient receptor potential channel (TRP)
   117738796 (pkd2)
SSDB
Motif
Pfam: PKD_channel Polycystin_dom Ion_trans Fer4_24 EF-hand_1 EF-hand_7 EF-hand_6 PRP38
Other DBs
NCBI-GeneID: 117738796
NCBI-ProteinID: XP_034400814
Ensembl: ENSCLMG00005001784
LinkDB
Position
1:17947919..17956205
AA seq 925 aa
MSSSRVRPQQPPQSQTGTLDSGEGMEMENIQHQDLGLGGVTGTPSPPSRQAWSRDNPGFE
AEEEIMEADWPPASPGRRSVSTASSSSGSSGLGNYTGAGSSTQIPRGGLYPTPTVDARQQ
DGHNHRSCMKQILQRIRILWGTELMEDSDSSRERYLRNVLREMITYITFLITICILTYGM
VSANMYYYTKVMSQLFLDTPLSAGDPSSFRSLSTMEDFWKFTEGPFLNGMYWEVWYNNKS
LPENQSLIYYENLLLGVPRLRQVKVRNESCSVHEDLRDEVLDCYNMYTQTNEETTSFGPK
NGTAWMYTAENDMNGSGYVGQISKYRGGGYYQDLSRTKEESATQLQFLKDQLWLDRGTRA
VFLDFSVYNGNINLFCIARLLVEFPATGGVVTSWQFQTVRLIRYVSGWDYFVGLCEVAFC
LFILYYMVEEVLEIRIHRLHYFKSLWNCLDVLIVVVCIIVIKVVRNHFNQTDRVCCFLCL
QLSVVAIIMNITRTAMVGNRLKGLLENHNAHPSFEPLANLQIQFNNMAAVIVFFSWIKLF
KFINFNKTMSQLSGTMSRCAKDLVGFAIMFFIIFLAYAQLAYLVFGTQVNDFSTFQASIF
TQFRIILGDFEFSEIEEANPVLGPIYYTTFVFFIFFILMNMFLAIINDTYSEVKADMSQQ
RSEMEMTDLLKKGCNKALMKLRLKKTAVDDISDSLRQAGGKLNFNELRQDLKGKGHTDSE
IQAIFAKYDHDGDQELTEHEHQQMRDDLEKEREDLDLERNSLTRPSSGRSFPRTQEDSEE
DDDEDSGHSSRHRGSSSGGVSYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLETMERAV
LKRRDVLGRLLDGVMEDERLGRDTDVHSELMERLVREELERCESDDVVSQVSHPQPATPV
GPRPRPSSSLSTDGLDMSTNGSSHV
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgagttcctcccgagtcagaccgcagcagccgccgcagagccagactggcacactggac
tcgggcgaggggatggagatggagaacatccagcaccaagacctgggtctcggaggagtc
acaggcaccccgtcccctccgtcgagacaagcgtggagccgggacaacccgggctttgag
gccgaggaggagattatggaagccgactggcctccggcgagccccgggaggaggtcggtg
tccacggcctccagcagcagcggcagcagcggcctgggcaactacaccggcgcgggcagc
agcacccagatcccccgaggaggactctacccgaccccgactgtggacgcccggcagcag
gacggccacaaccaccgcagctgtatgaagcagatactccaaaggatcagaattctgtgg
ggcacagagctgatggaggacagtgacagcagtcgagagaggtacctcaggaacgtgctg
agggagatgattacatatatcacattcctcatcaccatttgtatcttgacttatgggatg
gtgagtgccaatatgtactactacaccaaagtcatgtctcagctttttttggacacgccg
ctgtctgccggggacccttcctcttttagaagcctctcaaccatggaggatttctggaag
ttcacagagggacctttcctcaatggcatgtactgggaggtgtggtacaacaacaagagt
ctgccagagaatcagagtctcatctactacgagaacctcctcctcggggtgccacggctc
cggcaggtcaaagtccgaaacgagtcctgctccgtccacgaagatctgagagacgaggtg
ctggactgctacaacatgtacacccaaaccaatgaggagacgacctcctttggccccaag
aatggaaccgcgtggatgtatacggcagagaatgacatgaacgggagcggttatgtgggc
cagatatctaaatatagaggtggaggatactaccaagacctgtcccgaactaaagaggag
tcagcaacccaactgcagtttctcaaagaccagctgtggttggacagaggcaccagagcg
gtgttcctcgacttctctgtctacaatgggaacatcaaccttttctgcatcgccaggttg
ttggtggagtttcctgctactggtggggtggtgacctcctggcagttccaaacagtgcgt
ctgatacgatatgtgtccggctgggactactttgtgggtctgtgtgaggtggctttctgt
ctcttcatcctctactacatggtggaggaagtgctggagatccgcatccaccgcttgcat
tacttcaagagcctgtggaactgcctggatgttctcattgtcgtggtgtgtatcatcgtt
attaaagtcgttcgtaatcattttaaccagactgaccgagtttgttgttttctctgtctt
cagttgagtgtcgttgccatcattatgaacataaccagaaccgccatggttggcaaccgt
ctgaaaggcctgttggagaaccacaatgctcacccgagttttgagcctttggccaacctg
cagatccagttcaacaacatggccgcagtcattgtctttttttcctggataaagcttttt
aagttcatcaactttaataagaccatgagccagctgtccggcactatgtctcgctgtgcc
aaggaccttgtgggttttgccatcatgttcttcatcatcttcctggcgtacgctcaacta
gcctacctggtgtttggaacccaagtcaacgatttcagcactttccaagccagcatattt
acccagttccgtatcattctgggagactttgagttctcagaaatagaggaagcaaatcca
gtgcttggacccatctactatacaacctttgtcttcttcattttctttattctcatgaac
atgttcctggccatcatcaatgacacatactctgaggtgaaggccgacatgtcccagcag
aggtctgagatggaaatgactgatctccttaagaagggctgtaacaaagctttgatgaag
ttgagactcaagaagacggcagtagacgacatctccgacagtttgcgtcaggcggggggc
aaactaaactttaatgaactccgccaggatcttaaaggaaagggccacacagactcagag
atccaggcaatctttgccaagtatgatcacgatggcgaccaggagctgacggagcatgaa
caccagcagatgagagacgacctggagaaagagagagaggacttggatctggaacgcaat
tcgctgactcgacccagtagtgggcggagctttcctcgtacacaggaggactcggaggaa
gacgatgatgaggatagcggccatagctctcgtcaccgcggcagcagctcagggggcgtc
tcctatgaagagtttcaagtgctggtgagacgtgtggacagaatggagcactcaatcggc
agcatagtgtccaaaatagatgctgtgatcgtgaagttggaaactatggagagagctgta
ctcaaaaggagagatgtgctgggcagactgctggacggagtcatggaggatgagcgtctg
ggacgggacacagacgtccacagtgagctgatggagaggctagtgagggaggaactggag
cgctgcgagtccgacgatgtggtctcacaggtcagccacccacagcctgccactcccgtc
gggccccggccccgtccgtcttcttccctgtccaccgacggcctcgacatgagcacgaac
gggagcagccatgtgtga

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